Interaction mode
Mode:  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
LAGLIDADG_3
(PF14528.5)
4d6o 5ak9 2vs7 5akf 5akm 5akn 5o6g 5o6i 5a0w 4d6n 2vs8 4un7 4un8 4un9 4una 4unb 4unc 4ut0 34
GATA
(PF00320.26)
3vek 4hc7 4hc9 4hca 3vd6 3dfx 3dfv 5gat 10
RHD_DNA_bind
(PF00554.21)
1le5 2v2t 2o61 3
Endonuc-BglII
(PF09195.10)
1d2i 1dfm 4
RE_NgoFVII
(PF09565.9)
4rd5 4rdm 3
B3
(PF02362.20)
4ldx 6fas 2
CRISPR_Cas2
(PF09827.8)
5xvo 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1le5 2as5 2
© NPIDB team 2003 - 2019

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