Interaction mode
Mode:  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
LAGLIDADG_3
(PF14528.8)
2vs7 2vs8 4d6n 4d6o 4un7 4un8 4un9 4una 4unb 4unc 4ut0 5a0w 5ak9 5akf 5akm 5akn 5o6g 5o6i 49
GATA
(PF00320.29)
3dfv 3dfx 3vd6 3vek 4hc7 4hca 5gat 11
B3
(PF02362.23)
4ldx 6fas 6j9a 6j9b 6j9c 6sdg 6ycq 10
zf-C4
(PF00105.20)
1dsz 4cn3 6fbq 6l6l 6l6q 5
RHD_DNA_bind
(PF00554.24)
1le5 2o61 2v2t 3do7 4
RE_NgoFVII
(PF09565.12)
4rd5 4rdm 4
RE_BsaWI
(PF18643.3)
5dwa 5dwb 3
zf-H2C2_2
(PF13465.8)
1g2d 1g2f 2
Type_ISP_C
(PF18135.3)
5ffj 2
P53
(PF00870.20)
2ac0 1
CRISPR_Cas2
(PF09827.11)
5xvo 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1le5 2as5 2
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