Interaction mode
Mode:  H-Bb H-Mn L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_A
(PF00476.19)
4c8o 4c8n 4c8m 3
SASP
(PF00269.19)
2z3x 3
UvrD_C
(PF13361.5)
2is2 2
rve
(PF00665.25)
3jca 1
Mab-21
(PF03281.13)
4o6a 1
RVT_thumb
(PF06817.13)
3kk3 1
DNA_pol_B_thumb
(PF14791.5)
1bpz 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Eukaryotic DNA topoisomerase I, catalytic core
(d.163.1.2)
1a35 1a36 1ej9 1k4t 1sc7 5
HMG-box
(a.21.1.1)
1ckt 1qrv 2
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
1lwv 1
© NPIDB team 2003 - 2017

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