Interaction mode
Mode:  H-Bb H-Mn L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Rep_N
(PF08724.12)
1rz9 4zq9 5byg 9
Y1_Tnp
(PF01797.18)
2a6o 2vjv 6fi8 6
Topoisom_I
(PF01028.22)
1a31 1a36 1k4t 3
Cas_Cas1
(PF01867.18)
5xvp 6opm 3
HhH-GPD
(PF00730.27)
3cw7 3cwa 2
rve
(PF00665.28)
6voy 1
XPG_N
(PF00752.19)
5t9j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
3cw7 3cwa 2
Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
(c.18.1.3)
1oe5 1oe6 2
T-box
(b.2.5.4)
1h6f 1
Restriction endonuclease NgoIV
(c.52.1.10)
1fiu 4
© NPIDB team 2003 - 2021

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