Interaction mode
Mode:  H-Bb H-Mn L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Topoisom_I
(PF01028.19)
1a36 1k4t 1ej9 3
Bse634I
(PF07832.10)
3dvo 3mq6 3
NgoMIV_restric
(PF09015.9)
4abt 2
HhH-GPD
(PF00730.24)
3cwa 1
XPG_N
(PF00752.16)
5t9j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
3cw7 3cwa 2
Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
(c.18.1.3)
1oe5 1oe6 2
T-box
(b.2.5.4)
1h6f 1
Restriction endonuclease NgoIV
(c.52.1.10)
1fiu 4
© NPIDB team 2003 - 2019

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