Interaction mode
Mode:  H-Bb H-Mn L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
HhH-GPD
(PF00730.27)
2nof 2noz 2xhi 3i0w 3i0x 3ih7 3s6i 4b22 4b24 4ejy 4ew4 6w0m 13
RecA
(PF00154.23)
3cmx 7jy7 7jy8 7jy9 5
UDG
(PF03167.21)
1q3f 1ssp 2oyt 2ssp 4
Bse634I
(PF07832.13)
3mqy 3n78 6obj 5
HMG_box
(PF00505.21)
5jgh 6erp 6erq 3
CBFB_NFYA
(PF02045.17)
4g92 6y35 6y37 3
TaqI_C
(PF12950.9)
1g38 2ibt 2jg3 3
RVT_1
(PF00078.29)
3fsi 4xpc 2
RuvC
(PF02075.19)
4ld0 6s16 2
XPG_N
(PF00752.19)
5t9j 2
DNA_pol_A
(PF00476.22)
4xvi 1
Rad51
(PF08423.13)
7c98 1
Rep_N
(PF08724.12)
1rz9 1
DNA_pol_B_thumb
(PF14791.8)
5hrk 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
2nol 1
© NPIDB team 2003 - 2021

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