Interaction mode
Mode:  H-Bb H-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Dimer_Tnp_hAT
(PF05699.16)
4d1q 6dww 6dwy 6dx0 6
HMG_box
(PF00505.21)
1j46 1j47 6jrp 6
RNase_H
(PF00075.26)
1rtd 4hue 4huf 3
DNA_pol_A
(PF00476.22)
4x0p 4x0q 5
HMG_box_2
(PF09011.12)
3tmm 6hc3 3
TFIIB
(PF00382.21)
4roc 4rod 2
NUMOD3
(PF07460.13)
1i3j 1t2t 2
DNA_pol_B_thumb
(PF14791.8)
3pml 5vs2 2
Pyr_excise
(PF03013.16)
2fcc 2
SNF2-rel_dom
(PF00176.25)
6iy3 1
RNase_T
(PF00929.26)
4fzx 1
N6_N4_Mtase
(PF01555.20)
4zcf 1
CBFB_NFYA
(PF02045.17)
6y36 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
HMG-box
(a.21.1.1)
1gt0 1j46 1j47 1o4x 2gzk 6
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
1lww 1lwy 1n39 2noe 2noh 5
© NPIDB team 2003 - 2021

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