Interaction mode
Mode:  H-Bb H-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_A
(PF00476.19)
4c8l 4x0p 4
HMG_box
(PF00505.18)
1j46 1j47 2
RNase_H
(PF00075.23)
1rtd 1
HMG_box_2
(PF09011.9)
3tmm 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
HMG-box
(a.21.1.1)
1gt0 1j46 1j47 1o4x 2gzk 6
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
1lww 1lwy 1n39 2noe 2noh 5
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