Interaction mode
Mode:  H-Bb H-Mn S-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
DNA_pol_B_thumb
(PF14791.5)
4ub4 4ub3 4uaz 4uay 4uaw 4tuq 4rq8 4rq6 4rq5 4rq4 4ub5 4ubb 5wo0 5wnz 5wnx 5ugp 5ugn 5u9h 5bol 4z6f 4z6e 4ymo 4ubc 4rq3 4rq2 4rq0 4jwm 4gxj 4f5r 3tfs 3tfr 3rji 3rjf 3lk9 3gdx 3c2k 4kld 4kle 4rpz 4rpy 4rpx 4r65 4php 4pgx 4o5k 4nxz 4nlk 4klf 2fms 49
DNA_pol_A
(PF00476.19)
4ktq 1
DNA_ligase_aden
(PF01653.17)
4glx 1
Endonuclease_7
(PF02945.14)
2qnc 1
zf-His_Me_endon
(PF05551.10)
1ipp 1


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