Interaction mode
Mode:  H-Bb H-Mn S-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
DNA_pol_B_thumb
(PF14791.5)
4ub4 4ub3 4uay 4uaw 4tuq 4rq8 4rq6 4rq3 4ub5 4ymo 5wo0 5wnz 5wnx 5ugp 5ugn 5u9h 5bol 4z6f 4z6e 4rq2 4rq0 4rpx 4f5r 3tfs 3tfr 3rji 3rjf 3lk9 3gdx 3c2k 4gxj 4jwm 4php 4pgx 4o5k 4nxz 4nlk 4klf 4kle 4kld 2fms 41
DNA_pol_A
(PF00476.19)
4ktq 1
DNA_ligase_aden
(PF01653.17)
4glx 1
Endonuclease_1
(PF04231.12)
2ivk 1
zf-His_Me_endon
(PF05551.10)
1ipp 1


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