Interaction mode
Mode:  H-Bb H-Mn S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Bse634I
(PF07832.10)
3dvo 3n78 3v21 4
DNA_pol_A
(PF00476.19)
4dsj 1
Rep_N
(PF08724.9)
1rz9 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
T7 RNA polymerase
(e.8.1.3)
1s0v 1
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