Interaction mode
Mode:  H-Bb H-Mn S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
DNA_pol_A
(PF00476.19)
1nk7 1nk9 1qss 1tk5 1u49 1x9w 2hhq 2ktq 3ez5 3hp6 3ht3 3rr7 3rr8 3rrg 3rrh 3sz2 4ds5 4dsj 4ktq 4xiu 21
Bse634I
(PF07832.10)
3dpg 3dvo 3dw9 3mq6 3n78 3n7b 3v21 20
TaqI_C
(PF12950.6)
1g38 2ibs 2ih2 2jg3 6
DNA_pol_B_2
(PF03175.12)
2pyj 2pyl 3
DNA_pol_B
(PF00136.20)
3k58 1
rve
(PF00665.25)
4bac 1
RuvC
(PF02075.16)
6s16 1
Vsr
(PF03852.14)
1cw0 1
DNA_pol_B_thumb
(PF14791.5)
4p4o 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
T7 RNA polymerase
(e.8.1.3)
1s0v 1
© NPIDB team 2003 - 2021

text