Interaction mode
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Mode: H-Bb H-Mn S-Bb L-Bb L-Mj L-Mn Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn). |
| Pfam Domain Family | PDB entries | Number of structures |
| DNA_pol_A (PF00476.19) |
1nk7 1nk9 1qss 1tk5 1u49 1x9w 2hhq 2ktq 3ez5 3hp6 3ht3 3rr7 3rr8 3rrg 3rrh 3sz2 4ds5 4dsj 4ktq 4xiu | 21 |
| Bse634I (PF07832.10) |
3dpg 3dvo 3dw9 3mq6 3n78 3n7b 3v21 | 20 |
| TaqI_C (PF12950.6) |
1g38 2ibs 2ih2 2jg3 | 6 |
| DNA_pol_B_2 (PF03175.12) |
2pyj 2pyl | 3 |
| DNA_pol_B (PF00136.20) |
3k58 | 1 |
| rve (PF00665.25) |
4bac | 1 |
| RuvC (PF02075.16) |
6s16 | 1 |
| Vsr (PF03852.14) |
1cw0 | 1 |
| DNA_pol_B_thumb (PF14791.5) |
4p4o | 1 |
| SCOP Domain Family | PDB entries | Number of structures |
| T7 RNA polymerase (e.8.1.3) |
1s0v | 1 |
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