Interaction mode
Mode:  H-Bb H-Mn S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
T-box
(PF00907.24)
1h6f 1xbr 2x6v 4a04 4s0h 6f58 6f59 12
Endonuc-MspI
(PF09208.12)
1sa3 1yfi 3
RNA_pol
(PF00940.21)
6erq 6ymw 2
DDE_Tnp_1
(PF01609.23)
1mus 3ecp 2


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
T-box
(b.2.5.4)
1h6f 1xbr 3
Intron-encoded homing endonucleases
(d.4.1.3)
1u3e 1
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