Interaction mode
Mode:  H-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
Export table
SCOP Domain Family PDB entries Number of structures
DNA polymerase beta, N-terminal domain-like
(a.60.6.1)
1bpx 1bpy 1bpz 1mq2 1mq3 1rzt 1tv9 1tva 1xsl 1xsn 1xsp 1zjm 1zjn 2fmp 2fmq 2fms 2gws 2iso 2isp 2p66 2pfn 2pfo 2pfp 2pfq 2pxi 3c2k 3c2l 3c2m 3c5g 39
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
1yqr 3cvs 3cvt 3cw7 3cwa 3cws 3cwt 3cwu 3d4v 11
Eukaryotic DNA topoisomerase I, catalytic core
(d.163.1.2)
1a31 1lpq 1nh3 1r49 1rr8 1rrj 1seu 1tl8 8
Transcription factor IIB (TFIIB), core domain
(a.74.1.2)
1ais 1c9b 1vol 7
Nucleosome core histones
(a.22.1.1)
1kx4 1zla 2
Endonuclease III
(a.96.1.1)
1orn 1orp 2
p53 DNA-binding domain-like
(b.2.5.2)
1tsr 1tup 2
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
1nk9 4bdp 2
T7 RNA polymerase
(e.8.1.3)
1s76 1s77 2
Myb/SANT domain
(a.4.1.3)
1msf 1
AraC type transcriptional activator
(a.4.1.8)
1d5y 2
CAP C-terminal domain-like
(a.4.5.4)
3e6c 1
Restriction endonuclease FokI, N-terminal (recognition) domain
(a.4.5.12)
1fok 1
TBP-associated factors, TAFs
(a.22.1.3)
1jfi 1
C-terminal domain of RNA polymerase alpha subunit
(a.60.3.1)
1lb2 2
Trp repressor, TrpR
(a.4.12.1)
1trr 4
Restriction endonuclease EcoRV
(c.52.1.2)
2rve 1
C5 cytosine-specific DNA methylase, DCM
(c.66.1.26)
1dct 2
SRF-like
(d.88.1.1)
1hbx 1
Classic zinc finger, C2H2
(g.37.1.1)
1un6 1
Erythroid transcription factor GATA-1
(g.39.1.1)
2gat 1
Leucine zipper domain
(h.1.3.1)
1d66 1
© NPIDB team 2003 - 2017

text