Interaction mode
Mode:  H-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
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SCOP Domain Family PDB entries Number of structures
DNA polymerase beta, N-terminal domain-like
1bpx 1bpy 1bpz 1mq2 1mq3 1rzt 1tv9 1tva 1xsl 1xsn 1xsp 1zjm 1zjn 2fmp 2fmq 2fms 2gws 2iso 2isp 2p66 2pfn 2pfo 2pfp 2pfq 2pxi 3c2k 3c2l 3c2m 3c5g 39
DNA repair glycosylase, 2 C-terminal domains
1yqr 3cvs 3cvt 3cw7 3cwa 3cws 3cwt 3cwu 3d4v 11
Eukaryotic DNA topoisomerase I, catalytic core
1a31 1lpq 1nh3 1r49 1rr8 1rrj 1seu 1tl8 8
Transcription factor IIB (TFIIB), core domain
1ais 1c9b 1vol 7
Nucleosome core histones
1kx4 1zla 2
Endonuclease III
1orn 1orp 2
p53 DNA-binding domain-like
1tsr 1tup 2
DnaQ-like 3'-5' exonuclease
1nk9 4bdp 2
T7 RNA polymerase
1s76 1s77 2
Myb/SANT domain
1msf 1
AraC type transcriptional activator
1d5y 2
CAP C-terminal domain-like
3e6c 1
Restriction endonuclease FokI, N-terminal (recognition) domain
1fok 1
TBP-associated factors, TAFs
1jfi 1
C-terminal domain of RNA polymerase alpha subunit
1lb2 2
Trp repressor, TrpR
1trr 4
Restriction endonuclease EcoRV
2rve 1
C5 cytosine-specific DNA methylase, DCM
1dct 2
1hbx 1
Classic zinc finger, C2H2
1un6 1
Erythroid transcription factor GATA-1
2gat 1
Leucine zipper domain
1d66 1
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