Interaction mode
Mode:  H-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
UDG
(PF03167.18)
4jgc 4fnc 4z7b 4z7z 2rba 4xeg 6
Exo_endo_phos
(PF03372.22)
5wn0 2voa 5dff 4
Topoisom_I
(PF01028.19)
1lpq 1r49 2
Herpes_ICP4_N
(PF03584.14)
5mhk 4
zf-CXXC
(PF02008.19)
6asb 2
HMG_box
(PF00505.18)
5jgh 1
XPG_N
(PF00752.16)
5co8 1
RNase_T
(PF00929.23)
4fzy 1
Toprim
(PF01751.21)
2xcr 1
RNA_pol_I_TF
(PF04090.11)
5w5y 1
AAA_23
(PF13476.5)
5f3w 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA repair glycosylase, 2 C-terminal domains
(a.96.1.3)
1m3h 1yqk 2nof 3cvs 3cvt 3cw7 3cws 3cwt 3cwu 3d4v 18
Uracil-DNA glycosylase
(c.18.1.1)
1emh 1emj 2oxm 2oyt 2ssp 5
Restriction endonuclease BamHI
(c.52.1.3)
1bhm 3bam 2
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
(c.52.1.25)
1w36 1
© NPIDB team 2003 - 2019

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