Interaction mode
Mode:  H-Bb S-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Histone
(PF00125.23)
1id3 3x1s 5b1m 5gt0 5xm1 3wtp 5x0x 5xm0 1p3f 1p3b 11
IMS
(PF00817.19)
3mfi 1t3n 4ir9 5c5j 4r8u 4q43 1s9f 3oha 3mfh 3ohb 10
WGR
(PF05406.14)
4dqy 4opx 4oqa 4oqb 8
RNA_pol_Rpb1_1
(PF04997.11)
5iyb 5iy8 5iyc 5iy7 4
IN_DBD_C
(PF00552.20)
5u1c 3jca 4
RVT_connect
(PF06815.12)
5j2p 1rtd 2
Endonuclease_7
(PF02945.14)
2qnf 2
CBFD_NFYB_HMF
(PF00808.22)
4g92 1
Hjc
(PF01870.17)
2wj0 1
HIN
(PF02760.14)
3rnu 1
Exo_endo_phos
(PF03372.22)
5wn5 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1kx4 3b6f 3
CopG-like
(a.43.1.3)
1ea4 1
© NPIDB team 2003 - 2019

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