Interaction mode
Mode:  H-Bb S-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
IMS
(PF00817.19)
4ir9 5c5j 4r8u 4q43 3ohb 3oha 3mfi 3mfh 1s9f 1t3n 10
WGR
(PF05406.14)
4oqb 4oqa 4opx 4dqy 8
Histone
(PF00125.23)
1p3b 1p3f 3wtp 3x1s 5
RNA_pol_Rpb1_1
(PF04997.11)
5iy7 5iy8 5iyb 5iyc 4
RVT_connect
(PF06815.12)
1rtd 5j2p 2
IN_DBD_C
(PF00552.20)
3jca 2
Endonuclease_7
(PF02945.14)
2qnf 2
CBFD_NFYB_HMF
(PF00808.22)
4g92 1
Hjc
(PF01870.17)
2wj0 1
HIN
(PF02760.14)
3rnu 1
DNA_pol3_alpha
(PF07733.11)
5fkw 1
CENP-T_C
(PF15511.5)
5cpi 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1kx4 3b6f 3
CopG-like
(a.43.1.3)
1ea4 1
© NPIDB team 2003 - 2017

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