Interaction mode
Mode:  H-Bb S-Bb L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1owr 1p7h 1pzu 2o93 11
Replication initiation protein E1
(d.89.1.2)
1ksx 1ksy 6
Replication modulator SeqA, C-terminal DNA-binding domain
(d.228.1.1)
1j3e 1lrr 2
Nucleosome core histones
(a.22.1.1)
1kx5 1
STAT DNA-binding domain
(b.2.5.5)
1bg1 1
Restriction endonuclease EcoRI
(c.52.1.1)
1cl8 1
Restriction endonuclease BamHI
(c.52.1.3)
3bam 1
Restriction endonuclease PvuII
(c.52.1.6)
3pvi 2
GCM domain
(d.239.1.1)
1odh 1
© NPIDB team 2003 - 2017

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