Interaction mode
Mode:  H-Bb S-Bb L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
MethyltransfD12
(PF02086.14)
4rtj 4rtk 4rtm 4rtn 4rtp 4rtq 4rtr 7
RHD_DNA_bind
(PF00554.21)
1owr 2o93 2as5 1s9k 1pzu 1p7h 16
T_Ag_DNA_bind
(PF02217.15)
4gdf 4fgn 3qfq 4
RE_Eco29kI
(PF09517.9)
3mx4 3nic 3
MazE_antitoxin
(PF04014.17)
2k1n 3
Rep_N
(PF08724.9)
1rz9 2
Endonuc-PvuII
(PF09225.9)
3pvi 2
MH1
(PF03165.15)
4zl2 1
Phi-29_GP4
(PF05464.10)
2fio 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1owr 1p7h 1pzu 2o93 11
Replication initiation protein E1
(d.89.1.2)
1ksx 1ksy 6
Replication modulator SeqA, C-terminal DNA-binding domain
(d.228.1.1)
1j3e 1lrr 2
Nucleosome core histones
(a.22.1.1)
1kx5 1
STAT DNA-binding domain
(b.2.5.5)
1bg1 1
Restriction endonuclease EcoRI
(c.52.1.1)
1cl8 1
Restriction endonuclease BamHI
(c.52.1.3)
3bam 1
Restriction endonuclease PvuII
(c.52.1.6)
3pvi 2
GCM domain
(d.239.1.1)
1odh 1
© NPIDB team 2003 - 2017

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