Interaction mode
Mode:  H-Bb S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
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SCOP Domain Family PDB entries Number of structures
N-terminal domain of MutM-like DNA repair proteins
(b.113.1.1)
1nnj 1pji 1pjj 1pm5 1tdz 1xc8 6
Restriction endonuclease PvuII
(c.52.1.6)
1eyu 1f0o 1pvi 6
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1pzu 2
3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
(b.46.1.2)
1f6o 1
Restriction endonuclease EcoRV
(c.52.1.2)
4rve 1
Restriction endonuclease BamHI
(c.52.1.3)
2bam 1
Restriction endonuclease BglI
(c.52.1.4)
1dmu 1
DNA-binding domain from NDT80
(b.2.5.7)
2euz 1
© NPIDB team 2003 - 2017

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