Interaction mode
Mode:  H-Bb S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Fapy_DNA_glyco
(PF01149.23)
3gpx 2f5p 2f5o 2f5n 3gq5 5
RPOL_N
(PF14700.5)
1cez 2pi4 3e2e 2pi5 4
RE_Eco29kI
(PF09517.9)
3nic 3mx4 7
RHD_DNA_bind
(PF00554.21)
1a02 1pzu 3
Endonuc-PvuII
(PF09225.9)
1pvi 1f0o 2
RQC
(PF09382.9)
3aaf 2
Bac_DNA_binding
(PF00216.20)
2np2 1
Topoisom_I
(PF01028.19)
2b9s 1
LytTR
(PF04397.14)
3bs1 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
N-terminal domain of MutM-like DNA repair proteins
(b.113.1.1)
1nnj 1pji 1pjj 1pm5 1tdz 1xc8 6
Restriction endonuclease PvuII
(c.52.1.6)
1eyu 1f0o 1pvi 6
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1pzu 2
3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
(b.46.1.2)
1f6o 1
Restriction endonuclease EcoRV
(c.52.1.2)
4rve 1
Restriction endonuclease BamHI
(c.52.1.3)
2bam 1
Restriction endonuclease BglI
(c.52.1.4)
1dmu 1
DNA-binding domain from NDT80
(b.2.5.7)
2euz 1
© NPIDB team 2003 - 2017

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