Interaction mode
Mode:  H-Bb S-Bb L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_B
(PF00136.20)
5iud 4fyd 4k8x 4k8z 4khq 4khu 4ki4 4khw 3maq 3iay 3k58 3k59 3k5l 3k5m 3k57 18
Histone
(PF00125.23)
1aoi 3tu4 4jjn 3c1c 2f8n 5cpi 1eqz 1f66 1s32 1p3i 14
DNA_pol_A
(PF00476.19)
1skr 1x9s 2ajq 4ztu 2hht 2hhv 4ztz 7
Toprim
(PF01751.21)
2xkk 2rgr 2
DNA_ligase_A_M
(PF01068.20)
3l2p 1
Piwi
(PF02171.16)
4n41 1
Exo_endo_phos
(PF03372.22)
5dg0 1
DNA_pol3_alpha
(PF07733.11)
3e0d 1
RPOL_N
(PF14700.5)
1qln 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1eqz 1f66 1kx5 1p3i 1s32 1zbb 9
Prokaryotic DNA-bending protein
(a.55.1.1)
1ouz 1owf 1owg 2ht0 5
HNH-motif
(d.4.1.1)
1v14 1v15 3
Lambda integrase-like, catalytic core
(d.163.1.1)
1ma7 1pvr 2
Replication modulator SeqA, C-terminal DNA-binding domain
(d.228.1.1)
1lrr 1
© NPIDB team 2003 - 2017

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