Interaction mode
Mode:  H-Bb S-Bb S-Mj L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
LAGLIDADG_3
(PF14528.5)
4unb 4d6n 2vs8 4unc 4
MetJ
(PF01340.19)
1mj2 1mjq 1mjo 11
RHH_1
(PF01402.20)
2hzv 7
AFT
(PF08731.10)
4lmg 3
Tra_M
(PF05261.10)
3on0 2
MatP_C
(PF17414.1)
4d8j 2
Arc
(PF03869.13)
3qoq 1
Arm-DNA-bind_3
(PF13356.5)
3rmp 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Met repressor, MetJ (MetR)
(a.43.1.5)
1cma 1mj2 1mjo 1mjp 1mjq 13
CopG-like
(a.43.1.3)
1ea4 2hzv 9
Intron-encoded homing endonucleases
(d.4.1.3)
1a73 1evw 4
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1a35 1k4t 2
GCC-box binding domain
(d.10.1.2)
1gcc 1
© NPIDB team 2003 - 2019

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