Interaction mode
Mode:  H-Bb S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family PDB entries Number of structures
Restriction endonuclease EcoRV
(c.52.1.2)
1az0 1b97 1bgb 1bua 1eo3 1eo4 1eon 1eoo 1rv5 1rva 1rvb 1rvc 1stx 1suz 1sx8 2b0d 2b0e 23
Group I mobile intron endonuclease
(d.95.2.1)
1bp7 1g9y 1g9z 1m5x 1mow 1n3e 1n3f 1p8k 1r7m 1t9i 1t9j 1u0c 1u0d 37
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1rrj 1seu 1t8i 3
Arc/Mnt-like phage repressors
(a.43.1.1)
1bdt 1par 2
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1owr 1vkx 3
Trafficking protein A-like
(a.43.1.8)
2bsq 2h1o 4
Intein endonuclease
(d.95.2.2)
1lwt 1
SMAD MH1 domain
(d.164.1.1)
1ozj 1
Restriction endonuclease HincII
(c.52.1.19)
1xhu 1
Restriction endonuclease MspI
(c.52.1.23)
1yfi 1
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