Interaction mode
Mode:  H-Bb S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family PDB entries Number of structures
Restriction endonuclease EcoRV
1az0 1b97 1bgb 1bua 1eo3 1eo4 1eon 1eoo 1rv5 1rva 1rvb 1rvc 1stx 1suz 1sx8 2b0d 2b0e 23
Group I mobile intron endonuclease
1bp7 1g9y 1g9z 1m5x 1mow 1n3e 1n3f 1p8k 1r7m 1t9i 1t9j 1u0c 1u0d 37
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
1rrj 1seu 1t8i 3
Arc/Mnt-like phage repressors
1bdt 1par 2
Rel/Dorsal transcription factors, DNA-binding domain
1owr 1vkx 3
Trafficking protein A-like
2bsq 2h1o 4
Intein endonuclease
1lwt 1
SMAD MH1 domain
1ozj 1
Restriction endonuclease HincII
1xhu 1
Restriction endonuclease MspI
1yfi 1
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