Interaction mode
Mode:  H-Bb S-Bb S-Mj L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_methylase
(PF00145.19)
10mh 1fjx 1m0e 1mht 1skm 2c7o 2c7p 2c7q 2c7r 2hr1 2i9k 2uyc 2uyh 2uz4 2z6a 2zcj 3eeo 3mht 4mht 5ciy 5mht 6mht 7mht 8mht 24
Endonuc-EcoRV
(PF09233.13)
1az0 1b94 1b95 1b96 1b97 1bss 1bsu 1bua 1eo3 1eo4 1eon 1eoo 1eop 1rv5 1rva 1rvb 1suz 1sx8 2b0d 2b0e 5f8a 29
Endonuc-HincII
(PF09226.13)
1kc6 1tw8 1tx3 2gie 2gig 2gih 2gii 2gij 3e40 3e41 3e43 3e44 3e45 3ebc 29
Exo_endo_phos
(PF03372.25)
4gz1 4puq 5ht2 5inl 5inp 5inq 8
LytTR
(PF04397.17)
3bs1 4xqj 4xqn 4xxe 9
Ter
(PF05472.13)
2i05 2i06 4xr0 4xr1 4
RecA
(PF00154.23)
3cmx 7jy8 7jy9 4
RestrictionSfiI
(PF11487.10)
2ezv 2f03 3
Topoisom_I_N
(PF02919.17)
1k4t 1rrj 2
HTH_56
(PF18662.3)
5vfx 2
MutH
(PF02976.17)
2aoq 1
Arm-DNA-bind_1
(PF09003.12)
2wcc 1
Gti1_Pac2
(PF09729.11)
4m8b 1
R-HINP1I
(PF11463.10)
2flc 1
PDDEXK_5
(PF11645.10)
2ost 1
LAGLIDADG_3
(PF14528.8)
5a0w 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Restriction endonuclease EcoRV
(c.52.1.2)
1b94 1b95 1b96 1bss 1bsu 1bua 1eo3 1eop 1rv5 1rva 1rvb 1rvc 1stx 1suz 1sx5 1sx8 2b0d 2b0e 4rve 24
C5 cytosine-specific DNA methylase, DCM
(c.66.1.26)
10mh 1fjx 1m0e 1mht 1skm 2c7p 2c7q 2c7r 3mht 6mht 7mht 8mht 12
Restriction endonuclease HincII
(c.52.1.19)
1kc6 1tw8 1tx3 1xhu 1xhv 2gie 21
T7 RNA polymerase
(e.8.1.3)
1cez 2pi4 2pi5 3
Group I mobile intron endonuclease
(d.95.2.1)
1r7m 2
Replication terminator protein (Tus)
(e.2.1.1)
2i05 1
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