Interaction mode
Mode:  H-Bb S-Bb S-Mn L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
Histone
(PF00125.23)
1m1a 1u35 3x1t 4jjn 4x23 5
DNA_pol3_alpha
(PF07733.11)
3f2b 3f2c 3f2d 3
Endonuc-BglII
(PF09195.10)
2p0j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DNA repair protein MutS, domain I
(d.75.2.1)
1ewq 1fw6 1ng9 1nne 1oh5 1w7a 1wb9 1wbb 8
Nucleosome core histones
(a.22.1.1)
1m1a 1u35 2f8n 4
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