Interaction mode
Mode:  H-Bb S-Bb S-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RVT_1
(PF00078.29)
1n6q 1rtd 1t05 3jsm 3kk2 3klf 3klh 3v4i 4r5p 5txl 5txm 5txn 5txo 5txp 6an2 6an8 6anq 6asw 6avm 6avt 6p1x 6p2g 6uit 6ujy 6ujz 6uk0 6wph 6wpj 38
Histone
(PF00125.26)
1u35 2f8n 3azf 5jrg 5y0c 5y0d 6kvd 6kw4 6xjd 11
DNA_pol_B
(PF00136.23)
3cfp 4dtn 4khu 4ki4 4m3t 5
Exo_endo_phos
(PF03372.25)
2dnj 1
DNA_ligase_OB_2
(PF14743.8)
6rau 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Prokaryotic DNA-bending protein
(a.55.1.1)
1ihf 1ouz 1owf 1owg 1p78 5
DNA repair protein MutS, domain I
(d.75.2.1)
1e3m 1oh6 1oh7 1oh8 1wbd 5
Nucleosome core histones
(a.22.1.1)
2fj7 1
TATA-box binding protein (TBP), C-terminal domain
(d.129.1.1)
1qn3 1
© NPIDB team 2003 - 2021

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