Interaction mode
Mode:  H-Bb S-Bb S-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RVT_1
(PF00078.26)
1rtd 2
Histone
(PF00125.23)
2f8n 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Prokaryotic DNA-bending protein
(a.55.1.1)
1ihf 1ouz 1owf 1owg 1p78 5
DNA repair protein MutS, domain I
(d.75.2.1)
1e3m 1oh6 1oh7 1oh8 1wbd 5
Nucleosome core histones
(a.22.1.1)
2fj7 1
TATA-box binding protein (TBP), C-terminal domain
(d.129.1.1)
1qn3 1
© NPIDB team 2003 - 2017

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