Interaction mode
Mode:  L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
LAG1-DNAbind
(PF09271.10)
2f8x 5eg6 5e24 2fo1 4j2x 3v79 1ttu 3brd 3brg 3iag 3nbn 12
zf-CXXC
(PF02008.19)
5w9q 3qmi 3qmg 3qmd 3pta 3pt6 7
TAL_effector
(PF03377.12)
4osk 4osi 4osj 3ugm 11
RHD_DNA_bind
(PF00554.21)
3gut 1a66 1ram 1le5 4
Cas_Cas1
(PF01867.15)
5xvo 5xvp 5ds5 4
HIT
(PF01230.22)
3spl 3spd 6
DNA_methylase
(PF00145.16)
6brr 5yx2 2
Dimer_Tnp_Tn5
(PF02281.15)
3ecp 1mus 2
RNA_pol_Rpb2_3
(PF04565.15)
6flp 5x21 2
MazE_antitoxin
(PF04014.17)
2k1n 3
zf-C2HC
(PF01530.17)
2mf8 2
PD-C2-AF1
(PF09310.9)
1cqt 2
RE_Eco29kI
(PF09517.9)
3nic 2
Zn_clus
(PF00172.17)
1qp9 1
HSF_DNA-bind
(PF00447.16)
5hdn 1
MCM
(PF00493.22)
6f0l 1
MethyltransfD12
(PF02086.14)
1yfj 1
Piwi
(PF02171.16)
4n47 1
Cnd2
(PF05786.13)
5oqp 1
H2TH
(PF06831.13)
3gpx 1
DNA_pol3_alpha
(PF07733.11)
4iqj 1
MerR_1
(PF13411.5)
5c8e 1
Histone_H2A_C
(PF16211.4)
1eqz 1
Cas9_PI
(PF16595.4)
5y36 1
MSL2-CXC
(PF16682.4)
4rkg 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1le5 1le9 1lei 1nfk 1ram 8
DNA-binding protein LAG-1 (CSL)
(b.2.5.8)
1ttu 2fo1 3brd 3brf 4
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
1k82 4
© NPIDB team 2003 - 2019

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