Interaction mode
Mode:  L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RNA_pol_Rpb2_3
(PF04565.18)
3how 3hox 5uha 5uhb 5uhd 5uhe 5uhf 5uhg 5x21 5zx2 6dv9 6dvb 6dvd 6flp 6flq 6l74 6pmj 6wr8 7chw 7khb 20
LAG1-DNAbind
(PF09271.13)
1ttu 2f8x 2fo1 3brd 3brg 3iag 3nbn 3v79 4j2x 5e24 5eg6 6dks 6py8 20
zf-CXXC
(PF02008.22)
3pt6 3pta 3qmd 3qmg 3qmi 5w9q 6asb 8
RHD_DNA_bind
(PF00554.24)
1le5 1le9 1nfk 1ram 3do7 3gut 11
TAL_effector
(PF03377.15)
3ugm 4cja 4osi 4osk 12
Histone_H2A_C
(PF16211.7)
1eqz 1zbb 6r92 6r94 5
VRR_NUC
(PF08774.13)
4r8a 4ri9 4ria 5
DNA_pol_B_exo1
(PF03104.21)
3iay 3rmd 6s1o 3
Helicase_C
(PF00271.33)
6kw5 6tda 2
IN_DBD_C
(PF00552.23)
5m0r 6vdk 2
RNA_pol_Rpb1_1
(PF04997.14)
5fmf 7c17 2
Neil1-DNA_bind
(PF09292.12)
5itr 5ity 2
HIT
(PF01230.25)
3spl 4
Ku
(PF02735.18)
6erf 4
Zn_clus
(PF00172.20)
6gys 2
BAH
(PF01426.20)
6w8v 2
zf-C2HC
(PF01530.20)
2mf8 2
Cas_Cas1
(PF01867.18)
5xvo 2
PD-C2-AF1
(PF09310.12)
1cqt 2
RVT_1
(PF00078.29)
3v81 1
TFIIB
(PF00382.21)
6gyk 1
HSF_DNA-bind
(PF00447.19)
5hdn 1
MCM
(PF00493.25)
6f0l 1
DNA_topoisoIV
(PF00521.22)
6n1p 1
RNA_pol_Rpb2_6
(PF00562.30)
6ted 1
IMS
(PF00817.22)
4f50 1
HTH_3
(PF01381.24)
3bdn 1
Methylase_S
(PF01420.21)
7btq 1
FtsK_SpoIIIE
(PF01580.20)
6t8b 1
MethyltransfD12
(PF02086.17)
1yfj 1
SAD_SRA
(PF02182.19)
2zke 1
N6_Mtase
(PF02384.18)
7btq 1
SMC_N
(PF02463.21)
6wg3 1
RAG2
(PF03089.16)
6xnz 1
TCR
(PF03638.17)
4rkg 1
PolC_DP2
(PF03833.15)
6knc 1
ORC2
(PF04084.16)
7jps 1
Pox_A22
(PF04848.15)
6p7b 1
MutS_IV
(PF05190.20)
3thy 1
MutS_III
(PF05192.20)
3thy 1
ORC6
(PF05460.15)
5zr1 1
Cnd2
(PF05786.16)
5oqp 1
DNA_pol3_alpha
(PF07733.14)
4iqj 1
PDDEXK_1
(PF12705.9)
6ppu 1
MerR_1
(PF13411.8)
5c8e 1
RPOL_N
(PF14700.8)
5ola 1
RHD_dimer
(PF16179.7)
1nfk 1
Cas9_PI
(PF16595.7)
5y36 1
MSL2-CXC
(PF16682.7)
4rkg 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1le5 1le9 1lei 1nfk 1ram 8
DNA-binding protein LAG-1 (CSL)
(b.2.5.8)
1ttu 2fo1 3brd 3brf 4
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
1k82 4
© NPIDB team 2003 - 2021

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