Interaction mode
Mode:  L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
LAG1-DNAbind
(PF09271.10)
3nbn 3iag 3brg 3brd 4j2x 2fo1 2f8x 5e24 1ttu 3v79 10
zf-CXXC
(PF02008.19)
3pt6 3qmd 3qmg 3qmi 3pta 5
TAL_effector
(PF03377.12)
4osi 4osj 4osk 3ugm 11
RHD_DNA_bind
(PF00554.21)
1ram 3gut 1le5 3
HIT
(PF01230.22)
3spl 3spd 6
Dimer_Tnp_Tn5
(PF02281.15)
3ecp 1mus 2
zf-C2HC
(PF01530.17)
2mf8 2
PD-C2-AF1
(PF09310.9)
1cqt 2
RE_Eco29kI
(PF09517.9)
3nic 2
Zn_clus
(PF00172.17)
1qp9 1
Ets
(PF00178.21)
5e8i 1
Cas_Cas1
(PF01867.15)
5ds5 1
MethyltransfD12
(PF02086.14)
1yfj 1
Piwi
(PF02171.16)
4n47 1
DNA_pol_B_exo1
(PF03104.18)
3rmd 1
MH1
(PF03165.15)
4zl3 1
RNA_pol_Rpb1_1
(PF04997.11)
5fmf 1
H2TH
(PF06831.13)
3gpx 1
MerR_1
(PF13411.5)
5c8e 1
Histone_H2A_C
(PF16211.4)
1eqz 1
MSL2-CXC
(PF16682.4)
4rkg 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1le5 1le9 1lei 1nfk 1ram 8
DNA-binding protein LAG-1 (CSL)
(b.2.5.8)
1ttu 2fo1 3brd 3brf 4
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
1k82 4
© NPIDB team 2003 - 2017

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