Interaction mode
Mode:  L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol3_delt_C
(PF14840.5)
3gli 3glg 3glf 4
Zn_clus
(PF00172.17)
1hwt 1qp9 3
MSL2-CXC
(PF16682.4)
4rkg 4rkh 3
zf-CXXC
(PF02008.19)
4pzi 2kkf 2
UDG
(PF03167.18)
3uob 3uo7 2
IMS
(PF00817.19)
4f4z 1
RNA_pol_Rpb2_3
(PF04565.15)
4oip 1
RPOL_N
(PF14700.5)
3e3j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Uracil-DNA glycosylase
(c.18.1.1)
1q3f 1ssp 2
Zn2/Cys6 DNA-binding domain
(g.38.1.1)
1hwt 1qp9 4
STAT DNA-binding domain
(b.2.5.5)
1bf5 1
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
2py5 1
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
(c.52.1.25)
1w36 1
© NPIDB team 2003 - 2017

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