Interaction mode
Mode:  L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
RNA_pol_Rpb2_3
(PF04565.18)
2o5i 4g7o 4oip 4wqs 5x22 6alh 6c04 6kqg 6m6c 6ow3 6pb4 6pb5 6pmi 6psw 6wvj 7c97 18
DNA_methylase
(PF00145.19)
6f57 6u8p 6u8v 6u8w 6u8x 6u90 6u91 6w89 6w8j 15
Fapy_DNA_glyco
(PF01149.26)
1r2z 3a46 3vk7 3vk8 4cis 4nrw 5itu 5ity 11
zf-CXXC
(PF02008.22)
2kkf 4hp1 4pzi 5exh 5w9q 5
UDG
(PF03167.21)
4yig 4z3a 5cys 6u15 5
DNA_pol3_delt_C
(PF14840.8)
3glf 3glg 3gli 6
SRAP
(PF02586.16)
6oe7 6oea 6oeb 3
AP_endonuc_2
(PF01261.26)
4k1g 6khy 4
MSL2-CXC
(PF16682.7)
4rkg 4rkh 4
SAD_SRA
(PF02182.19)
2zkf 6vcs 3
FAD_binding_7
(PF03441.16)
3cvx 3cvy 2
CRISPR_Cse1
(PF09481.12)
5u07 5u0a 2
Cas_Csy1
(PF09611.12)
6b44 6ne0 2
RuvC_III
(PF18541.3)
6m0w 6m0x 2
Zn_clus
(PF00172.20)
1hwt 2
RE_R_Pab1
(PF09522.12)
3waz 2
IMS
(PF00817.22)
4f4z 1
zf-C2HC
(PF01530.20)
2jx1 1
N6_N4_Mtase
(PF01555.20)
6pbd 1
Cas_Cas1
(PF01867.18)
5ds5 1
MC1
(PF05854.13)
2nbj 1
BHD_3
(PF10405.11)
6uin 1
ORC5_C
(PF14630.8)
5zr1 1
RPOL_N
(PF14700.8)
3e3j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
Uracil-DNA glycosylase
(c.18.1.1)
1q3f 1ssp 2
Zn2/Cys6 DNA-binding domain
(g.38.1.1)
1hwt 1qp9 4
STAT DNA-binding domain
(b.2.5.5)
1bf5 1
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
2py5 1
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
(c.52.1.25)
1w36 1
© NPIDB team 2003 - 2021

text