Interaction mode
Mode:  L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RNA_pol_Rpb2_3
(PF04565.15)
5x22 6alh 4wqs 6c04 2o5i 4g7o 8
UDG
(PF03167.18)
5cys 3uo7 3uob 4z3a 4
DNA_pol3_delt_C
(PF14840.5)
3glf 3glg 3gli 3
Zn_clus
(PF00172.17)
1hwt 1qp9 3
MSL2-CXC
(PF16682.4)
4rkh 4rkg 3
DNA_methylase
(PF00145.16)
6brr 5yx2 2
zf-CXXC
(PF02008.19)
4pzi 2kkf 2
IMS
(PF00817.19)
4f4z 1
MC1
(PF05854.10)
2nbj 1
RPOL_N
(PF14700.5)
3e3j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Uracil-DNA glycosylase
(c.18.1.1)
1q3f 1ssp 2
Zn2/Cys6 DNA-binding domain
(g.38.1.1)
1hwt 1qp9 4
STAT DNA-binding domain
(b.2.5.5)
1bf5 1
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
2py5 1
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
(c.52.1.25)
1w36 1
© NPIDB team 2003 - 2019

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