Interaction mode
Mode:  L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_B
(PF00136.20)
3suq 3tab 4m3z 3sun 3sq2 3sq1 3sq0 3snn 3s9h 3rwu 3rmb 3qno 3tae 3taf 4m3t 4m3r 4j2d 4fk4 4fjn 4e3s 4du3 4du1 4dtx 4dtu 4dts 4dtr 3tag 3qnn 3lzi 3lzj 3lds 1ig9 3cfr 3cfp 2ozs 2oyq 2dtu 1q9y 1q9x 3nae 3nci 3ndk 3qew 3qev 3qet 3qes 3qer 3qex 3qep 3qei 3nhg 3ngi 3ne6 55
RNase_H
(PF00075.23)
3kk2 3kk3 2
RVT_1
(PF00078.26)
3kk3 1j5o 2
TBP
(PF00352.20)
5iy7 5iyb 2
ResIII
(PF04851.14)
5iy8 5ivw 2
RNA_pol_Rpb1_5
(PF04998.16)
4v1o 4v1n 2
TCR
(PF03638.14)
5fd3 4
7kD_DNA_binding
(PF02294.17)
1bbx 2
MSL2-CXC
(PF16682.4)
4rkh 2
N6_N4_Mtase
(PF01555.17)
4zcf 1
Ada_Zn_binding
(PF02805.15)
1u8b 1
BTD
(PF09270.9)
3brg 1
AAA_23
(PF13476.5)
5f3w 1
RPOL_N
(PF14700.5)
3e3j 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1kx3 1kx5 3b6f 3b6g 7
Phage repressors
(a.35.1.2)
3orc 1
Restriction endonuclease BamHI
(c.52.1.3)
1esg 1
"Histone-like" proteins from archaea
(b.34.13.1)
1bbx 2
Classic zinc finger, C2H2
(g.37.1.1)
1un6 1
DNA-binding domains of HMG-I(Y)
(j.10.1.1)
2ezd 1
© NPIDB team 2003 - 2017

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