Interaction mode
Mode:  L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_B
(PF00136.20)
4m3z 3tab 3suq 3sun 3sq1 3sq0 3snn 3s9h 3rwu 3rmb 3qno 3tae 3taf 3tag 4m3t 4m3r 4j2d 4fk4 4fjn 4e3s 4du3 4du1 4dtx 4dtu 4dts 4dtr 3qnn 3qex 3lzi 3lds 3cfr 3cfp 3sq2 2ozs 2oyq 2dtu 1q9y 1q9x 1ig9 3ndk 3lzj 3nae 3nci 3qew 3qev 3qet 3qes 3qer 3qep 3qei 3ne6 3ngi 3nhg 55
RNase_H
(PF00075.23)
3kk3 3kk2 2
TBP
(PF00352.20)
5iyb 5iy7 2
TFIIF_beta
(PF02270.14)
5iyd 5iy9 2
ResIII
(PF04851.14)
5ivw 5iy8 2
RNA_pol_Rpb1_5
(PF04998.16)
4v1o 4v1n 2
HMG_box_2
(PF09011.9)
6erp 6erq 2
TCR
(PF03638.14)
5fd3 4
7kD_DNA_binding
(PF02294.17)
1bbx 2
MSL2-CXC
(PF16682.4)
4rkh 2
RVT_1
(PF00078.26)
1j5o 1
N6_N4_Mtase
(PF01555.17)
4zcf 1
Cas_Cas1
(PF01867.15)
5wfe 1
Ada_Zn_binding
(PF02805.15)
1u8b 1
RNA_pol_Rpb2_3
(PF04565.15)
5voi 1
BTD
(PF09270.9)
3brg 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Nucleosome core histones
(a.22.1.1)
1kx3 1kx5 3b6f 3b6g 7
Phage repressors
(a.35.1.2)
3orc 1
Restriction endonuclease BamHI
(c.52.1.3)
1esg 1
"Histone-like" proteins from archaea
(b.34.13.1)
1bbx 2
Classic zinc finger, C2H2
(g.37.1.1)
1un6 1
DNA-binding domains of HMG-I(Y)
(j.10.1.1)
2ezd 1
© NPIDB team 2003 - 2019

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