Interaction mode
Mode:  L-Mj 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RNA_pol_Rpb2_3
(PF04565.18)
4q4z 4xlr 5d4d 5uh5 5uh6 5uh8 5uhc 6asx 6b6h 6dve 6edt 6kon 6kop 6kqf 6ldi 6ovy 6p19 6p70 6psv 6vvy 6wmp 6wmr 6wmt 6wmu 6wr6 6wrg 7ckq 7khe 29
Histone_H2A_C
(PF16211.7)
6kiv 6r8y 6r8z 6r94 5
TAL_effector
(PF03377.15)
3ugm 4cja 4osk 6
IN_DBD_C
(PF00552.23)
5ejk 5m0q 5m0r 4
Cas_Cas1
(PF01867.18)
5xvn 5xvo 9
DNA_pol_B_exo1
(PF03104.21)
6p1h 6s1n 2
CRISPR_Cas2
(PF09827.11)
5xvo 2
DNA_topoisoIV
(PF00521.22)
6n1p 1
Linker_histone
(PF00538.21)
7c0j 1
Methylase_S
(PF01420.21)
2y7h 1
RNA_pol_A_CTD
(PF03118.17)
6n4c 1
RNA_pol_Rpb2_2
(PF04561.16)
5fmf 1
RNA_pol_Rpb2_1
(PF04563.17)
5fmf 1
RNA_pol_Rpb1_1
(PF04997.14)
6wmr 1
zf-FPG_IleRS
(PF06827.16)
3saw 1
DcpS_C
(PF11969.10)
6cvo 1
zf-H2C2_2
(PF13465.8)
2prt 1
RPOL_N
(PF14700.8)
5ola 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1le9 1
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
2pyj 1
© NPIDB team 2003 - 2021

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