Interaction mode
Mode:  S-Bb 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
zf-FPG_IleRS
(PF06827.16)
1k3w 1kfv 1nnj 1pji 1pjj 1pm5 1tdz 1xc8 2f5n 2f5p 2f5q 2f5s 2opf 2xzf 2xzu 3gpp 3gq3 3gq4 3jr4 3sar 3sas 3sbj 3u6e 3u6q 4g4o 4g4q 4pcz 4pd2 4pdi 6fbu 6h0s 6rnm 6rno 6rnr 6ro2 6rok 6rp0 6rp7 39
IMS
(PF00817.22)
1s9f 2atl 2r8h 2uvv 2v4r 2xcp 3bq0 3mr5 3rb0 3si8 3v6k 4f4w 4jv1 4u6p 5dqi 6jun 6jur 6m7t 6x77 21
RVT_connect
(PF06815.15)
2hmi 3kle 3v4i 5d3g 5j2m 5j2n 5j2q 5txm 6or7 6wph 6wpj 13
RAG2
(PF03089.16)
5ze2 6cg0 6cij 6dbi 6oem 6oeo 6oep 6oeq 6v0v 11
Ago_PAZ
(PF18309.3)
4kpy 4n41 4n76 4nca 4ncb 5xq2 10
DNA_pol_B_palm
(PF14792.8)
3c5g 3hx0 4k4g 4k4i 5dkw 7
TFIIA
(PF03153.15)
1ytf 5iy7 5iyb 5oqj 6o9l 5
IN_DBD_C
(PF00552.23)
5m0r 6puw 6rwn 6z2y 6
BTD
(PF09270.12)
2f8x 3v79 4j2x 6py8 5
Neil1-DNA_bind
(PF09292.12)
5itr 5itt 5itx 4
Cas9_PI2
(PF18070.3)
6m0v 6m0w 6m0x 3
DNA_pol_B
(PF00136.23)
2dtu 3tae 2
Bac_DNA_binding
(PF00216.23)
1p51 6lmj 2
NAM
(PF02365.17)
3swm 3swp 2
MerR_1
(PF13411.8)
5c8e 2
SET
(PF00856.30)
6kiv 1
tRNA_anti-codon
(PF01336.27)
5fkv 1
SAD_SRA
(PF02182.19)
6vcs 1
ERCC4
(PF02732.17)
2bgw 1
STAT_bind
(PF02864.17)
4y5w 1
Ku_N
(PF03731.17)
6zhe 1
DNA_gyraseA_C
(PF03989.15)
6rkw 1
ORC2
(PF04084.16)
7jk2 1
RNA_pol_Rpb1_5
(PF04998.19)
6c6s 1
PA-IIL
(PF07472.13)
5hch 1
Cdc6_C
(PF09079.13)
6wgi 1
VirDNA-topo-I_N
(PF09266.12)
3igc 1
zf-H2C2_2
(PF13465.8)
2gli 1
CENP-T_C
(PF15511.8)
7cro 1
RHD_dimer
(PF16179.7)
1imh 1
Cas9_Topo
(PF17894.3)
6joo 1
GEN1_C
(PF18380.3)
5co8 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
1k3w 1kfv 1l1t 1l1z 1l2d 1nnj 1pji 1pjj 1pm5 1r2y 1r2z 1tdz 1xc8 2ea0 2f5q 2f5s 17
Transcription factor IIA (TFIIA), beta-barrel domain
(b.56.1.1)
1nh2 1ytf 2
CopG-like
(a.43.1.3)
1ea4 1
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(b.1.18.1)
1imh 1
© NPIDB team 2003 - 2021

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