Interaction mode
Mode:  S-Bb 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RVT_connect
(PF06815.12)
5j2m 5d3g 5j2n 5j2q 3v4i 2hmi 3jyt 3kle 3klf 10
IMS
(PF00817.19)
1s9f 2r8h 4jv1 5c5j 5
TFIIA
(PF03153.12)
5iyb 1ytf 5iy7 3
DNA_pol_B
(PF00136.20)
2dtu 4ptf 2
TBP
(PF00352.20)
5iy6 5iya 2
zf-FPG_IleRS
(PF06827.13)
2f5p 2f5n 2
tRNA_anti-codon
(PF01336.24)
5fkv 1
ERCC4
(PF02732.14)
2bgw 1
Endonuclease_1
(PF04231.12)
2ivk 1
LytTR
(PF04397.14)
4xqq 1
MutS_IV
(PF05190.17)
1nne 1
MutS_III
(PF05192.17)
1nne 1
RNA_ligase
(PF09414.9)
2hvs 1
MerR_1
(PF13411.5)
5c8e 1
CENP-T_C
(PF15511.5)
5cpi 1
RHD_dimer
(PF16179.4)
1imh 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
1k3w 1kfv 1l1t 1l1z 1l2d 1nnj 1pji 1pjj 1pm5 1r2y 1r2z 1tdz 1xc8 2ea0 2f5q 2f5s 17
Transcription factor IIA (TFIIA), beta-barrel domain
(b.56.1.1)
1nh2 1ytf 2
CopG-like
(a.43.1.3)
1ea4 1
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(b.1.18.1)
1imh 1
© NPIDB team 2003 - 2017

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