Interaction mode
Mode:  S-Bb 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RVT_connect
(PF06815.12)
5txm 5j2q 5j2n 5j2m 3v4i 3kle 2hmi 3jyt 5d3g 9
IMS
(PF00817.19)
5c5j 2r8h 4jv1 1s9f 5
TFIIA
(PF03153.12)
5oqj 5iy7 5iyb 1ytf 4
RAG2
(PF03089.13)
6cij 6cg0 3
TBP
(PF00352.20)
5iy6 5iya 2
MutS_IV
(PF05190.17)
1ewq 1fw6 2
MutS_III
(PF05192.17)
1ewq 1fw6 2
zf-FPG_IleRS
(PF06827.13)
2f5p 2f5n 2
MerR_1
(PF13411.5)
5c8e 2
DNA_pol_B
(PF00136.20)
2dtu 1
tRNA_anti-codon
(PF01336.24)
5fkv 1
ERCC4
(PF02732.14)
2bgw 1
LytTR
(PF04397.14)
4xqq 1
CENP-T_C
(PF15511.5)
5cpi 1
RHD_dimer
(PF16179.4)
1imh 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
1k3w 1kfv 1l1t 1l1z 1l2d 1nnj 1pji 1pjj 1pm5 1r2y 1r2z 1tdz 1xc8 2ea0 2f5q 2f5s 17
Transcription factor IIA (TFIIA), beta-barrel domain
(b.56.1.1)
1nh2 1ytf 2
CopG-like
(a.43.1.3)
1ea4 1
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(b.1.18.1)
1imh 1
© NPIDB team 2003 - 2019

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