Interaction mode
Mode:  S-Bb L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RNA_pol
(PF00940.18)
6erp 3e3j 3
zf-CXXC
(PF02008.19)
4nw3 3pt6 2
zf-PARP
(PF00645.17)
4av1 2
HIN
(PF02760.14)
3rn5 1
Hom_end
(PF05204.13)
1lws 1
ParB
(PF08775.9)
2ntz 1
RE_Eco29kI
(PF09517.9)
3mx4 1
IMS_C
(PF11799.7)
2oh2 1
Cas9_PI
(PF16595.4)
5f9r 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Restriction endonuclease PvuII
(c.52.1.6)
2pvi 1
Intein endonuclease
(d.95.2.2)
1lws 1
Replication initiation protein E1
(d.89.1.2)
1ksx 4
© NPIDB team 2003 - 2019

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