Interaction mode
Mode:  S-Bb L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
RE_Eco29kI
(PF09517.9)
3mx4 3nic 3
Transposase_1
(PF01359.17)
4r79 1
Topoisom_I_N
(PF02919.14)
1lpq 1
RQC
(PF09382.9)
4o3m 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
N-terminal domain of MutM-like DNA repair proteins
(b.113.1.1)
1k3w 1kfv 2ea0 2opf 2oq4 6
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1lpq 1
© NPIDB team 2003 - 2017

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