Interaction mode
Mode:  S-Bb L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_B
(PF00136.20)
4m3y 4fjh 4fjg 4fj9 4fj7 4dtp 4dto 4dtn 4dtm 4dtj 4fj5 3uiq 4fji 4fjj 4khs 4khn 4j2e 4j2a 4i9q 4fk2 4fk0 4fjx 4fjm 4fjl 4fjk 3taf 3tae 3tab 3rmb 3l8b 3kd5 3kd1 4j2b 3cq8 2ozm 2oyq 3rmc 3sq4 3suo 3sup 3spz 3spy 3sjj 3si6 3scx 49
BTD
(PF09270.9)
2f8x 4j2x 5e24 3v79 1ttu 5
DNA_ligase_aden
(PF01653.17)
2owo 1
Ku
(PF02735.15)
1jey 1
RQC
(PF09382.9)
4cgz 1
HTH_27
(PF13463.5)
3gfi 1
AAA_23
(PF13476.5)
5dac 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Prokaryotic DNA-bending protein
(a.55.1.1)
1ihf 1p71 2
N-terminal domain of MutM-like DNA repair proteins
(b.113.1.1)
1k82 2oq4 5
DNA-binding protein LAG-1 (CSL)
(b.42.7.1)
1ttu 3brf 2
Nucleosome core histones
(a.22.1.1)
1id3 1
© NPIDB team 2003 - 2017

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