Interaction mode
Mode:  S-Bb S-Mj L-Bb 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
IMS_C
(PF11799.7)
3pzp 3osp 3in5 3bjy 2oh2 2imw 2aq4 7
Arm-DNA-bind_1
(PF09003.9)
1z1g 1z1b 5
WRKY
(PF03106.14)
2lex 1
Hom_end
(PF05204.13)
1lwt 1
Arm-DNA-bind_3
(PF13356.5)
3rmp 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1a31 1tl8 2
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
2ram 1
Intein endonuclease
(d.95.2.2)
1lwt 1
© NPIDB team 2003 - 2017

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