Interaction mode
Mode:  S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family PDB entries Number of structures
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1nh3 1rr8 1sc7 3
Rel/Dorsal transcription factors, DNA-binding domain
(b.2.5.3)
1a3q 1nfk 2
SMAD MH1 domain
(d.164.1.1)
1mhd 1ozj 3
Restriction endonuclease MspI
(c.52.1.23)
1sa3 1yfi 3
P4 origin-binding domain-like
(a.4.5.20)
1dp7 1
Restriction endonuclease EcoRV
(c.52.1.2)
1eop 1
C5 cytosine-specific DNA methylase, DCM
(c.66.1.26)
9mht 1
Intein endonuclease
(d.95.2.2)
1lws 1
© NPIDB team 2003 - 2017

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