Interaction mode
Mode:  S-Bb S-Mj L-Bb L-Mj L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
Export table
Pfam Domain Family PDB entries Number of structures
Runt
(PF00853.18)
4l0y 3wu1 3wty 3wtu 3wtx 3wtw 3wtv 3wts 4l0z 4l18 1h9d 1hjb 1hjc 1io4 18
Endonuc-HincII
(PF09226.10)
3e43 3e45 2gii 3e41 3e3y 3e42 3e40 9
Topoisom_I_N
(PF02919.14)
1sc7 1a36 1ej9 1r49 1rr8 2b9s 6
T-box
(PF00907.21)
5t1j 5flv 5
Gti1_Pac2
(PF09729.8)
4qtk 4qtj 3
zf-PARP
(PF00645.17)
3od8 3oda 2
THAP
(PF05485.11)
2l1g 2ko0 2
Ada_Zn_binding
(PF02805.15)
1zgw 1
Endonuc-EcoRV
(PF09233.10)
2ge5 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family PDB entries Number of structures
RUNT domain
(b.2.5.6)
1h9d 1hjb 1hjc 1io4 7
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
(e.15.1.1)
1a36 1ej9 1r49 3
© NPIDB team 2003 - 2019

text