Interaction mode
Mode:  S-Bb S-Mj S-Mn L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_topoisoIV
(PF00521.22)
6waa 2
RPOL_N
(PF14700.8)
4boc 1
Cas9_PI
(PF16595.7)
6aeg 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
1clq 1
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