Interaction mode
Mode:  S-Bb S-Mn L-Bb 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
DNA_pol_B_palm
(PF14792.5)
4nlz 4m47 4nxz 4nlk 4o5k 4o9m 4pha 4phd 4m9l 4r64 4r65 4z6f 4z6e 4z6d 4ymo 4ub5 4tuq 4tup 4r66 4lvs 4klt 4klm 3tfr 3rji 3rjf 3lk9 3isd 3gdx 3c2k 2fms 3tfs 4f5n 4f5o 4klj 4jwn 4jwm 4gxk 4gxj 4f5r 4f5p 1tv9 42
TBP
(PF00352.20)
1ngm 4wzs 1vol 3
RVT_1
(PF00078.26)
3kk1 1r0a 2
BTD
(PF09270.9)
3nbn 1
PDDEXK_1
(PF12705.6)
3u44 1


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
"Histone-like" proteins from archaea
(b.34.13.1)
1azp 1azq 1bf4 1bnz 1c8c 1ca6 1wd0 1wd1 1wvl 9
TATA-box binding protein (TBP), C-terminal domain
(d.129.1.1)
1d3u 1jfi 1ngm 1qn6 1qn7 1qn9 1qnc 1rm1 1vol 10
Prokaryotic DNA-bending protein
(a.55.1.1)
1p51 1p71 1p78 3
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