Interaction mode
Mode:  S-Bb S-Mn L-Bb L-Mn 
Description: Conserved protein-DNA contacts are provided by β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the minor groove of DNA (Mn).
Pfam domains
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Pfam Domain Family PDB entries Number of structures
TBP
(PF00352.20)
1c9b 1vto 1ytb 1ytf 4roc 4rod 4roe 4v1n 4v1o 5fur 5fyw 5fz5 1vtl 1rm1 1cdw 1d3u 1jfi 1ngm 1nvp 1qn4 1qne 34
RVT_1
(PF00078.26)
3kjv 3kk2 2


SCOP domains
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family PDB entries Number of structures
TATA-box binding protein (TBP), C-terminal domain
(d.129.1.1)
1ais 1c9b 1cdw 1d3u 1ngm 1nh2 1nvp 1qn3 1qn4 1qn5 1qn6 1qn7 1qn8 1qn9 1qna 1qnb 1qnc 1qne 1rm1 1tgh 1vol 1ytb 1ytf 74
Prokaryotic DNA-bending protein
(a.55.1.1)
1p51 2
"Histone-like" proteins from archaea
(b.34.13.1)
1ca5 1
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