Pfam domain
Pfam family: RVT_1 (PF00078.29)
Uniprot AC: P03366
RecName: Gag-Pol polyprotein
Begin-End: 662-833
Organism: Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Interaction Mode:  H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 

Sequence:
IKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDE
DFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQ
YMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYEL
Structures of the domain P03366 662-833
Export table
PDB ID Exp. data Chain Begin-End Interaction mode
1rtd X-ray 3.2 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
1rtd X-ray 3.2 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6asw X-ray 2.61 B 63-258 None
6asw X-ray 2.61 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6asw X-ray 2.61 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6asw X-ray 2.61 D 63-259 None
5txo X-ray 2.55 B 63-243 None
5txo X-ray 2.55 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
5txo X-ray 2.55 D 63-243 None
5txo X-ray 2.55 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
2hmi X-ray 2.8 B 63-234 None
2hmi X-ray 2.8 A 63-234  L-Bb 
3klh X-ray 2.9 B 63-234 None
3klh X-ray 2.9 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
1t05 X-ray 3 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6an8 X-ray 2.6 B 63-258 None
6an8 X-ray 2.6 A 63-234  H-Bb S-Bb L-Bb L-Mn 
6an8 X-ray 2.6 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6an8 X-ray 2.6 D 63-259 None
3klf X-ray 3.15 M 63-234  S-Bb S-Mn L-Bb L-Mn 
3klf X-ray 3.15 N 63-243 None
3klf X-ray 3.15 B 63-243 None
3klf X-ray 3.15 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3klf X-ray 3.15 F 63-243 None
3klf X-ray 3.15 E 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3klf X-ray 3.15 J 63-243 None
3klf X-ray 3.15 I 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
4r5p X-ray 2.89 B 63-243 None
4r5p X-ray 2.89 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
4r5p X-ray 2.89 D 63-243 None
4r5p X-ray 2.89 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
1hvu X-ray 4.75 J 63-234 None
1hvu X-ray 4.75 G 63-234 None
1hvu X-ray 4.75 D 63-234 None
1hvu X-ray 4.75 A 63-234 None
3jyt X-ray 3.3 B 63-243 None
3jyt X-ray 3.3 A 63-234  S-Bb S-Mn L-Bb L-Mn 
3klg X-ray 3.65 F 63-243 None
3klg X-ray 3.65 E 63-234  S-Bb S-Mj S-Mn L-Bb L-Mn 
3klg X-ray 3.65 B 63-243 None
3klg X-ray 3.65 A 63-234  H-Mn S-Bb S-Mj S-Mn L-Bb L-Mn 
1t03 X-ray 3.1 B 63-234 None
1t03 X-ray 3.1 A 63-234  S-Bb S-Mn L-Bb 
5txl X-ray 2.5 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
5txl X-ray 2.5 D 63-243 None
5txl X-ray 2.5 B 63-259 None
5txl X-ray 2.5 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6o9e X-ray 2.4 D 63-255 None
6o9e X-ray 2.4 C 63-234 None
6o9e X-ray 2.4 B 63-241 None
6o9e X-ray 2.4 A 63-234 None
6hak X-ray 3.95 D 63-240 None
6hak X-ray 3.95 C 63-234 None
6hak X-ray 3.95 A 63-234 None
6hak X-ray 3.95 B 63-243 None
6an2 X-ray 2.7 B 63-258 None
6an2 X-ray 2.7 A 63-234  H-Bb H-Mn S-Bb L-Bb L-Mn 
6an2 X-ray 2.7 D 63-259 None
6an2 X-ray 2.7 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3jsm X-ray 3 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3jsm X-ray 3 B 63-243 None
5txm X-ray 2.7 B 63-259 None
5txm X-ray 2.7 A 63-234  H-Bb S-Bb S-Mn L-Bb 
5txm X-ray 2.7 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
5txm X-ray 2.7 D 63-243 None
5hro X-ray 2.75 A 63-234 None
5hro X-ray 2.75 B 63-243 None
5hro X-ray 2.75 D 63-243 None
5hro X-ray 2.75 C 63-234 None
6oun X-ray 2.66 B 63-244 None
6oun X-ray 2.66 A 63-234  H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 
5i42 X-ray 3.3 B 63-243 None
5i42 X-ray 3.3 A 63-234 None
5i42 X-ray 3.3 D 63-243 None
5i42 X-ray 3.3 C 63-234 None
5txn X-ray 2.55 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
5txn X-ray 2.55 B 63-243 None
5txn X-ray 2.55 D 63-243 None
5txn X-ray 2.55 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
4puo X-ray 2.9 B 63-243 None
4puo X-ray 2.9 A 63-234 None
4puo X-ray 2.9 D 63-243 None
4puo X-ray 2.9 C 63-234 None
4q0b X-ray 3.3 B 63-243 None
4q0b X-ray 3.3 A 63-234 None
4q0b X-ray 3.3 C 63-234 None
4q0b X-ray 3.3 D 63-243 None
4pqu X-ray 2.51 B 63-243 None
4pqu X-ray 2.51 A 63-234 None
4pqu X-ray 2.51 D 63-243 None
4pqu X-ray 2.51 C 63-234 None
5i3u X-ray 3 D 63-255 None
5i3u X-ray 3 C 63-234 None
5i3u X-ray 3 B 63-227 None
5i3u X-ray 3 A 63-234 None
4pwd X-ray 3 B 63-243 None
4pwd X-ray 3 A 63-234 None
4pwd X-ray 3 D 63-243 None
4pwd X-ray 3 C 63-234 None
3v81 X-ray 2.85 D 63-243 None
3v81 X-ray 2.85 C 63-234  L-Bb 
3v81 X-ray 2.85 B 63-243 None
3v81 X-ray 2.85 A 63-234  L-Bb L-Mj 
5hlf X-ray 2.95 B 63-227 None
5hlf X-ray 2.95 A 63-234 None
5hlf X-ray 2.95 D 63-255 None
5hlf X-ray 2.95 C 63-234 None
6waz X-ray 4.1 A 63-234 None
5txp X-ray 2.7 D 63-243 None
5txp X-ray 2.7 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
5txp X-ray 2.7 B 63-243 None
5txp X-ray 2.7 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3v4i X-ray 2.8 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3v4i X-ray 2.8 D 63-243 None
3v4i X-ray 2.8 B 63-243 None
3v4i X-ray 2.8 A 63-234  H-Bb S-Bb S-Mn L-Bb 
5hp1 X-ray 2.9 D 63-255 None
5hp1 X-ray 2.9 C 63-234 None
5hp1 X-ray 2.9 B 63-227 None
5hp1 X-ray 2.9 A 63-234 None
6amo X-ray 2.5 C 63-234  H-Bb S-Bb L-Bb L-Mn 
6amo X-ray 2.5 D 63-259 None
6amo X-ray 2.5 B 63-258 None
6amo X-ray 2.5 A 63-234  H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 
3kle X-ray 3.2 B 63-263 None
3kle X-ray 3.2 A 63-234  S-Bb L-Bb L-Mn 
3kle X-ray 3.2 F 63-263 None
3kle X-ray 3.2 E 63-234  S-Bb L-Bb L-Mn 
3kle X-ray 3.2 I 63-234  S-Bb L-Bb 
3kle X-ray 3.2 J 63-263 None
3kle X-ray 3.2 N 63-263 None
3kle X-ray 3.2 M 63-234  S-Bb S-Mn L-Bb L-Mn 
6avm X-ray 2.5 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6avm X-ray 2.5 D 63-259 None
6avm X-ray 2.5 B 63-258 None
6avm X-ray 2.5 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
3v6d X-ray 2.7 D 63-243 None
3v6d X-ray 2.7 C 63-234  H-Bb S-Bb S-Mn L-Bb 
3v6d X-ray 2.7 B 63-243 None
3v6d X-ray 2.7 A 63-234  H-Bb S-Bb S-Mn L-Bb 
1r0a X-ray 2.8 B 63-234 None
1r0a X-ray 2.8 A 63-234  H-Bb S-Bb S-Mn L-Bb 
1hys X-ray 3 B 63-234 None
1hys X-ray 3 A 63-234 None
1j5o X-ray 3.5 A 63-234  L-Bb L-Mn 
1j5o X-ray 3.5 B 63-234 None
1n5y X-ray 3.1 B 63-234 None
1n5y X-ray 3.1 A 63-234  H-Bb S-Bb S-Mn L-Bb 
1n6q X-ray 3 B 63-234 None
1n6q X-ray 3 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
5d3g X-ray 2.3 A 63-234 None
5d3g X-ray 2.3 B 63-241 None
5d3g X-ray 2.3 D 63-255 None
5d3g X-ray 2.3 C 63-234 None
6bhj X-ray 2.81 A 63-234 None
6bhj X-ray 2.81 B 63-227 None
6bhj X-ray 2.81 D 63-255 None
6bhj X-ray 2.81 C 63-234 None
6b19 X-ray 4.5 A 25-234 None
6b19 X-ray 4.5 B 63-257 None
6wb1 X-ray 4.7 A 63-234 None
6anq X-ray 2.59 B 63-258 None
6anq X-ray 2.59 A 63-234  H-Bb S-Bb L-Bb L-Mn 
6anq X-ray 2.59 D 63-259 None
6anq X-ray 2.59 C 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 
6avt X-ray 2.6 D 63-259 None
6avt X-ray 2.6 C 63-234  H-Bb S-Bb L-Bb L-Mn 
6avt X-ray 2.6 B 63-258 None
6avt X-ray 2.6 A 63-234  H-Bb S-Bb S-Mn L-Bb L-Mn 


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