Domains of Pfam family DNA_pol_B (PF00136.20 )
Domain ID Uniprot AC Species Begin-End #Structures Interaction modes
D0VWU9_344-748 D0VWU9 Thermococcus kodakarensis 344-748 4  H-Bb H-Mn S-Bb L-Bb L-Mn 
 H-Bb S-Bb L-Bb L-Mn *
P09884_774-1227 P09884 Homo sapiens 774-1227 8  H-Bb H-Mn S-Bb L-Bb L-Mj L-Mn 
 H-Bb L-Bb L-Mj L-Mn *
 H-Bb S-Bb L-Bb L-Mj L-Mn 
 H-Bb S-Bb L-Bb L-Mn *
P0CL76_344-748 P0CL76 Pyrococcus abyssi 344-748 1  H-Bb S-Bb L-Bb *
P0CL77_344-748 P0CL77 Pyrococcus abyssi 344-748 9  H-Bb S-Bb L-Bb 
 H-Bb S-Bb L-Bb L-Mn 
P13382_783-1229 P13382 Saccharomyces cerevisiae 783-1229 4  H-Bb S-Bb L-Bb L-Mn *
 L-Bb *
 S-Bb L-Bb *
P15436_546-973 P15436 Saccharomyces cerevisiae 546-973 2  H-Bb H-Mn S-Bb L-Bb L-Mn *
 H-Bb H-Mn S-Bb S-Mn L-Bb L-Mj L-Mn 
P21189_365-765 P21189 Escherichia coli 365-765 8  H-Bb H-Mn S-Bb L-Bb L-Mj L-Mn 
 H-Bb H-Mn S-Bb L-Bb L-Mn 
 H-Bb H-Mn S-Bb S-Mj L-Bb L-Mn 
 H-Bb S-Bb L-Bb L-Mj L-Mn 
 H-Bb S-Bb L-Bb L-Mn *
 H-Bb S-Bb S-Mj L-Bb L-Mn 
 S-Bb L-Bb *
P21951_579-787 P21951 Saccharomyces cerevisiae 579-787 1  S-Bb L-Bb 
P21951_580-796 P21951 Saccharomyces cerevisiae 580-796 2  H-Bb H-Mn S-Bb 
 H-Bb H-Mn S-Bb L-Bb 
P21951_581-778 P21951 Saccharomyces cerevisiae 581-778 1  S-Bb *
P21951_619-791 P21951 Saccharomyces cerevisiae 619-791 1
P21951_725-787 P21951 Saccharomyces cerevisiae 725-787 2
P21951_737-809 P21951 Saccharomyces cerevisiae 737-809 2  H-Bb H-Mn L-Bb 
P21951_843-984 P21951 Saccharomyces cerevisiae 843-984 1  H-Bb S-Bb L-Bb L-Mn *
P21951_852-993 P21951 Saccharomyces cerevisiae 852-993 4  H-Bb S-Bb L-Bb L-Mn 
P21951_861-1002 P21951 Saccharomyces cerevisiae 861-1002 2  H-Bb S-Bb L-Bb L-Mn 
 S-Bb L-Bb L-Mn 
P21951_874-1015 P21951 Saccharomyces cerevisiae 874-1015 2  H-Bb S-Bb L-Bb L-Mn 
 S-Bb L-Bb L-Mn *
P28340_444-882 P28340 Homo sapiens 444-882 5  H-Bb L-Bb L-Mn *
 H-Bb S-Bb L-Bb *
P56689_344-748 P56689 Thermococcus gorgonarius 344-748 2  H-Bb L-Bb L-Mn *
 H-Bb S-Bb L-Bb L-Mn *
P61875_344-749 P61875 Pyrococcus furiosus 344-749 1  H-Bb H-Mn S-Bb L-Bb L-Mn 
P77933_353-747 P77933 Thermococcus kodakarensis 353-747 3  H-Bb H-Mn S-Bb L-Bb L-Mn 
 H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 
Q38087_363-779 Q38087 Enterobacteria phage RB69 363-779 4
Q38087_363-784 Q38087 Enterobacteria phage RB69 363-784 156  H-Bb H-Mj H-Mn S-Bb L-Bb L-Mn 
 H-Bb H-Mn S-Bb L-Bb 
 H-Bb H-Mn S-Bb L-Bb L-Mn 
 H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 
 H-Bb L-Bb 
 H-Bb S-Bb L-Bb 
 H-Bb S-Bb L-Bb L-Mn 
 H-Bb S-Bb S-Mn L-Bb L-Mn 
 H-Mn S-Bb L-Bb L-Mn 
 L-Bb 
 L-Bb L-Mn 
 S-Bb 
 S-Bb L-Bb 
 S-Bb L-Bb L-Mn 
Q56366_344-748 Q56366 Thermococcus sp. 344-748 10  H-Bb H-Mn S-Bb L-Bb L-Mn 
Interaction class:  L-Bb 

* interaction modes not found in water-containing structures resolved with X-RAY DIFFRACTION method having resolution better than 3 Angstrom

© NPIDB team 2003 - 2020

text