Domains of Pfam family RNA_pol_Rpb1_1 (PF04997.11 )
Domain ID Uniprot AC Species Begin-End #Structures Interaction modes
A0QS66_4-417 A0QS66 Mycobacterium smegmatis 4-417 6  H-Bb L-Bb *
 L-Bb 
A7ZUK2_15-342 A7ZUK2 Escherichia coli O139:H28 15-342 3
B2SQQ2_14-342 B2SQQ2 Xanthomonas oryzae pv. oryzae 14-342 2  H-Bb L-Bb L-Mj L-Mn *
 H-Mj S-Mj L-Mj *
C4R4Y0_11-341 C4R4Y0 Komagataella phaffii 11-341 16
G3MZY8_15-354 G3MZY8 Bos taurus 15-354 2
I3LJR4_15-354 I3LJR4 Sus scrofa 15-354 3  H-Bb *
 H-Bb L-Bb *
 H-Bb L-Mj L-Mn *
P04050_11-313 P04050 Saccharomyces cerevisiae 11-313 7  H-Bb *
 H-Bb S-Bb *
 H-Bb S-Bb L-Bb *
P04050_11-340 P04050 Saccharomyces cerevisiae 11-340 108  H-Bb *
 H-Bb H-Mj S-Bb L-Mj *
 H-Bb L-Bb *
 H-Bb S-Bb *
 L-Bb *
 L-Bb L-Mj *
P04051_10-368 P04051 Saccharomyces cerevisiae 10-368 11  H-Bb *
 H-Bb L-Bb *
 L-Bb *
P0A8T7_3-180 P0A8T7 Escherichia coli 3-180 1  L-Bb *
P0A8T7_4-329 P0A8T7 Escherichia coli 4-329 11  H-Bb L-Bb *
 L-Bb *
P0A8T7_15-342 P0A8T7 Escherichia coli 15-342 43  H-Bb H-Mj L-Bb *
 H-Bb H-Mj L-Bb L-Mj *
 H-Bb H-Mj L-Bb L-Mn *
 H-Bb H-Mj S-Mj L-Bb *
 H-Bb L-Bb *
 H-Mj L-Bb *
 L-Bb *
 L-Mn *
P0A8T7_187-276 P0A8T7 Escherichia coli 187-276 1
P0A8T8_15-342 P0A8T8 Escherichia coli O157:H7 15-342 3  H-Bb L-Bb *
P10964_8-471 P10964 Saccharomyces cerevisiae 8-471 16  H-Bb *
 H-Bb H-Mj L-Bb *
 H-Bb L-Bb *
 L-Bb *
P10964_9-384 P10964 Saccharomyces cerevisiae 9-384 4
P10964_11-390 P10964 Saccharomyces cerevisiae 11-390 3
P10964_11-400 P10964 Saccharomyces cerevisiae 11-400 1
P24928_15-354 P24928 Homo sapiens 15-354 9  H-Bb S-Bb *
P9WGY7_4-417 P9WGY7 Mycobacterium tuberculosis 4-417 30  H-Bb *
 H-Bb H-Mj *
 H-Bb H-Mj L-Bb 
 H-Bb L-Bb 
 H-Mj *
 L-Bb *
Q72HM6_3-191 Q72HM6 Thermus thermophilus 3-191 1
Q72HM6_430-618 Q72HM6 Thermus thermophilus 430-618 1  L-Bb *
Q8RQE8_2-158 Q8RQE8 Thermus thermophilus 2-158 13
Q8RQE8_2-328 Q8RQE8 Thermus thermophilus 2-328 1  H-Bb H-Mj L-Bb *
Q8RQE8_2-395 Q8RQE8 Thermus thermophilus 2-395 1
Q8RQE8_2-420 Q8RQE8 Thermus thermophilus 2-420 1
Q8RQE8_2-435 Q8RQE8 Thermus thermophilus 2-435 7  H-Bb H-Mj 
 H-Bb H-Mj L-Bb 
 H-Bb L-Bb 
 L-Bb 
Q8RQE8_2-460 Q8RQE8 Thermus thermophilus 2-460 1
Q8RQE8_2-484 Q8RQE8 Thermus thermophilus 2-484 2
Q8RQE8_2-495 Q8RQE8 Thermus thermophilus 2-495 4
Q8RQE8_3-191 Q8RQE8 Thermus thermophilus 3-191 34  H-Bb *
Q8RQE8_3-449 Q8RQE8 Thermus thermophilus 3-449 1
Q8RQE8_431-618 Q8RQE8 Thermus thermophilus 431-618 34  H-Bb 
 H-Bb H-Mj *
 H-Bb L-Bb 
 L-Bb *
Q8RQE8_478-617 Q8RQE8 Thermus thermophilus 478-617 13  H-Bb 
 H-Bb L-Bb *
Q9KWU6_2-192 Q9KWU6 Thermus aquaticus 2-192 7  L-Bb *
Q9KWU6_2-322 Q9KWU6 Thermus aquaticus 2-322 1
Q9KWU6_2-495 Q9KWU6 Thermus aquaticus 2-495 6  L-Bb *
Q9KWU6_423-618 Q9KWU6 Thermus aquaticus 423-618 7
Interaction class: Miscellaneous

* interaction modes not found in water-containing structures resolved with X-RAY DIFFRACTION method having resolution better than 3 Angstrom

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