Domains of Pfam family RNA_pol_Rpb1_1 (PF04997.14 )
Domain ID Uniprot AC Species Begin-End #Structures Interaction modes
A0A063XB23_4-331 A0A063XB23 Bacillus subtilis 4-331 1  H-Bb L-Bb *
A0QS66_4-417 A0QS66 Mycobacterium smegmatis 4-417 9  H-Bb L-Bb *
 L-Bb 
A7ZUK2_15-342 A7ZUK2 Escherichia coli O139:H28 15-342 3
B2SQQ2_14-342 B2SQQ2 Xanthomonas oryzae pv. oryzae 14-342 2  H-Bb L-Bb L-Mj L-Mn *
 H-Mj S-Mj L-Mj *
C3SIA2_16-342 C3SIA2 Escherichia coli 16-342 9
C4R4Y0_11-341 C4R4Y0 Komagataella phaffii 11-341 16
G3MZY8_15-354 G3MZY8 Bos taurus 15-354 2
I3LJR4_15-354 I3LJR4 Sus scrofa 15-354 3  H-Bb *
 H-Bb L-Bb *
 H-Bb L-Mj L-Mn *
O57204_2-288 O57204 Vaccinia virus 2-288 1  L-Bb *
P04050_11-340 P04050 Saccharomyces cerevisiae 11-340 115  H-Bb *
 H-Bb H-Mj S-Bb L-Mj *
 H-Bb L-Bb *
 H-Bb S-Bb *
 H-Bb S-Bb L-Bb *
 L-Bb *
 L-Bb L-Mj *
P04051_10-368 P04051 Saccharomyces cerevisiae 10-368 11  H-Bb *
 H-Bb L-Bb *
 L-Bb *
P0A8T7_2-188 P0A8T7 Escherichia coli 2-188 1  L-Bb *
P0A8T7_2-330 P0A8T7 Escherichia coli 2-330 4  H-Bb L-Bb *
 L-Bb *
P0A8T7_15-342 P0A8T7 Escherichia coli 15-342 63  H-Bb *
 H-Bb H-Mj L-Bb *
 H-Bb H-Mj L-Bb L-Mj *
 H-Bb H-Mj L-Bb L-Mn *
 H-Bb H-Mj S-Mj L-Bb *
 H-Bb L-Bb *
 H-Mj *
 H-Mj L-Bb *
 L-Bb *
 L-Bb L-Mj *
 L-Mn *
P0A8T7_179-276 P0A8T7 Escherichia coli 179-276 1
P0A8T8_15-342 P0A8T8 Escherichia coli O157:H7 15-342 8  H-Bb *
 H-Bb L-Bb *
 L-Bb *
P10964_8-471 P10964 Saccharomyces cerevisiae 8-471 24  H-Bb *
 H-Bb H-Mj L-Bb *
 H-Bb L-Bb *
 L-Bb *
P24928_15-354 P24928 Homo sapiens 15-354 9  H-Bb S-Bb *
P37871_7-331 P37871 Bacillus subtilis 7-331 1  H-Mj L-Bb *
P9WGY7_4-417 P9WGY7 Mycobacterium tuberculosis 4-417 36  H-Bb *
 H-Bb H-Mj *
 H-Bb H-Mj L-Bb 
 H-Bb L-Bb 
 H-Mj *
 L-Bb *
Q2A1M8_12-340 Q2A1M8 Francisella tularensis subsp. holarctica 12-340 1  L-Mj *
Q5JE33_5-319 Q5JE33 Thermococcus kodakarensis 5-319 1
Q72HM6_3-191 Q72HM6 Thermus thermophilus 3-191 1
Q72HM6_430-618 Q72HM6 Thermus thermophilus 430-618 1  L-Bb *
Q8RQE8_2-328 Q8RQE8 Thermus thermophilus 2-328 1  H-Bb H-Mj L-Bb *
Q8RQE8_2-395 Q8RQE8 Thermus thermophilus 2-395 1
Q8RQE8_2-420 Q8RQE8 Thermus thermophilus 2-420 1
Q8RQE8_2-435 Q8RQE8 Thermus thermophilus 2-435 7  H-Bb H-Mj 
 H-Bb H-Mj L-Bb *
 H-Bb L-Bb 
 L-Bb *
Q8RQE8_2-460 Q8RQE8 Thermus thermophilus 2-460 1
Q8RQE8_2-484 Q8RQE8 Thermus thermophilus 2-484 2
Q8RQE8_2-495 Q8RQE8 Thermus thermophilus 2-495 4
Q8RQE8_3-191 Q8RQE8 Thermus thermophilus 3-191 47  H-Bb *
Q8RQE8_3-449 Q8RQE8 Thermus thermophilus 3-449 1
Q8RQE8_431-618 Q8RQE8 Thermus thermophilus 431-618 47  H-Bb 
 H-Bb H-Mj *
 H-Bb L-Bb 
 L-Bb *
Q9KWU6_2-192 Q9KWU6 Thermus aquaticus 2-192 7  L-Bb *
Q9KWU6_2-322 Q9KWU6 Thermus aquaticus 2-322 1
Q9KWU6_2-495 Q9KWU6 Thermus aquaticus 2-495 6  L-Bb *
Q9KWU6_423-618 Q9KWU6 Thermus aquaticus 423-618 7
U9YPW3_16-342 U9YPW3 Escherichia coli 110957 16-342 1  H-Bb L-Bb *
Interaction class:  L-Bb 

* interaction modes not found in water-containing structures resolved with X-RAY DIFFRACTION method having resolution better than 3 Angstrom

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