Complexes with domains of Pfam family RNA_pol_Rpb1_1 (PF04997.11 )
PDB ID PDB Header  # of domains ↑ # of bound domains 
4xls TRANSCRIPTION 6 4
4g7o TRANSCRIPTION, TRANSFERASE/DNA 4 2
5d4d TRANSCRIPTION/DNA 4 2
4g7h TRANSCRIPTION, TRANSFERASE/DNA 4 2
5d4e TRANSCRIPTION/DNA 4 3
5d4c TRANSCRIPTION/DNA 4 2
4g7z TRANSCRIPTION, TRANSFERASE/DNA 4 2
4xlq TRANSCRIPTION/DNA 3 2
4yln TRANSCRIPTION/DNA/RNA 3 1
4ylo TRANSCRIPTION/DNA/RNA 3 1
4ylp TRANSCRIPTION/DNA/RNA 3 0
3aoi TRANSCRIPTION, TRANSFERASE/DNA/RNA 3 1
4xlp TRANSCRIPTION/DNA 3 2
4xln TRANSCRIPTION/DNA/RNA 3 0
4xlr TRANSCRIPTION/DNA 3 0
3aoh TRANSCRIPTION, TRANSFERASE/DNA/RNA 3 0
3hou TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID 2 2
4oip TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC 2 1
4oin TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC 2 1
5e17 TRANSCRIPTION/DNA/RNA 2 1
2o5j TRANSFERASE/DNA-RNA HYBRID 2 2
4q5s TRANSCRIPTION/DNA/RNA 2 1
4oiq TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC 2 1
4q4z TRANSCRIPTION/DNA 2 1
2ppb TRANSFERASE/DNA/RNA 2 2
4oir TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC 2 1
2ja7 TRANSFERASE 2 2
2o5i TRANSFERASE/DNA-RNA HYBRID 2 2
5i2d TRANSCRIPTION/DNA/RNA 2 0
4s20 TRANSFERASE/DNA/RNA 2 2
4oio TRANSCRIPTION, TRANSFERASE 2 1
4wqs TRANSFERASE/DNA/RNA 2 2
5e18 TRANSCRIPTION/DNA/RNA 2 1
2ja8 TRANSFERASE 1 1
3iyd TRANSCRIPTION/DNA 1 1
2ja6 TRANSFERASE 1 1
3s1q TRANSCRIPTION/RNA/DNA 1 0
5c44 TRANSFERASE/DNA/RNA 1 1
5m5x TRANSCRIPTION 1 1
1y77 TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s15 TRANSCRIPTION/RNA/DNA 1 1
5iy6 TRANSCRIPTION, TRANSFERASE/DNA 1 0
1r9s TRANSCRIPTION/DNA-RNA HYBRID 1 1
3i4m TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
4a3f TRANSCRIPTION 1 1
5iya TRANSCRIPTION, TRANSFERASE/DNA 1 0
5tw1 TRANSCRIPTION ACTIVATOR/TRANSFERASE/DNA 1 1
4y52 TRANSCRIPTION/DNA/RNA 1 1
3hov TRANSCRIPTION, TRANSFERASE/DNA/RNA 1 1
4bbs TRANSCRIPTION 1 1
5iyc TRANSCRIPTION, TRANSFERASE/DNA 1 1
5uhe TRANSCRIPTION/DNA/RNA 1 1
3gtl TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
4a3e TRANSCRIPTION 1 1
5uh5 TRANSCRIPTION/DNA/RNA 1 0
2vum TRANSFERASE/TOXIN 1 1
4y7n TRANSCRIPTION/DNA/RNA 1 1
5fyw TRANSCRIPTION 1 0
2nvx TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s2d TRANSCRIPTION/RNA/DNA 1 1
5c4x TRANSFERASE/RNA/DNA 1 1
5m5w TRANSCRIPTION 1 1
1l9z TRANSCRIPTION/DNA 1 0
2e2h TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s17 TRANSCRIPTION/RNA/DNA 1 1
5ipl TRANSCRIPTION, TRANSFERASE/DNA/RNA 1 1
1sfo TRANSCRIPTION/DNA-RNA HYBRID 1 1
3po2 TRANSFERASE/DNA/RNA 1 1
5m3f TRANSCRIPTION 1 1
5iyd TRANSCRIPTION, TRANSFERASE/DNA/RNA 1 1
3hox TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID 1 1
5ipn TRANSCRIPTION, TRANSFERASE/DNA/RNA 1 1
3rzd TRANSCRIPTION/RNA/DNA 1 1
5uh8 TRANSCRIPTION/DNA/RNA 1 0
4v1n TRANSCRIPTION 1 0
3gto TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
4a3l TRANSCRIPTION 1 1
5c4j TRANSFERASE/DNA/RNA 1 1
5uhb TRANSCRIPTION/DNA/RNA 1 1
3rzo TRANSCRIPTION/RNA/DNA 1 1
3gtg TRANSCRIPTION, TRANSFERASE/DNA/RNA HYBRI 1 1
5c4a TRANSFERASE/RNA/DNA 1 1
2r7z TRANSCRIPTION/DNA-RNA HYBRID 1 1
4a3b TRANSCRIPTION 1 1
5c3e TRANSFERASE/DNA/RNA 1 1
5fmf TRANSCRIPTION 1 1
5iy7 TRANSCRIPTION, TRANSFERASE/DNA 1 1
2e2j TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s1n TRANSCRIPTION/RNA/DNA 1 0
5iy8 TRANSCRIPTION, TRANSFERASE/DNA 1 1
4a3k TRANSCRIPTION 1 1
1y1y TRANSFERASE/TRANSCRIPTION/DNA-RNA HYBRID 1 0
3s14 TRANSCRIPTION/RNA/DNA 1 1
4a3g TRANSCRIPTION 1 1
5my1 RIBOSOME 1 0
4b1o TRANSFERASE/DNA 1 0
3hoz TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID 1 1
4by1 TRANSCRIPTION 1 1
5uh6 TRANSCRIPTION/DNA/RNA/ANTIBIOTIC 1 0
5uhd TRANSCRIPTION/DNA/RNA 1 1
4gzz TRANSCRIPTION/DNA-RNA HYBRID 1 1
3gtq TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
4a93 TRANSCRIPTION 1 1
5fj8 TRANSCRIPTION 1 1
2ja5 TRANSFERASE 1 1
3gtk TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
5iyb TRANSCRIPTION, TRANSFERASE/DNA 1 1
2r93 TRANSFERASE/RNA 1 1
4a3d TRANSCRIPTION 1 1
2nvq TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
5uhc TRANSCRIPTION/DNA/RNA 1 0
1i6h TRANSCRIPTION/DNA-RNA HYBRID 1 1
2nvt TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s1r TRANSCRIPTION/RNA/DNA 1 1
4x6a TRANSCRIPTION/DNA 1 0
4x67 TRANSCRIPTION/DNA 1 0
2b63 TRANSFERASE/RNA 1 1
3s16 TRANSCRIPTION/RNA/DNA 1 1
5uhf TRANSCRIPTION/DNA/RNA 1 1
1r9t TRANSCRIPTION/DNA-RNA HYBRID 1 1
3m4o TRANSFERASE/DNA-RNA HYBRID 1 1
3h3v TRANSFERASE/DNA/RNA 1 1
5fz5 TRANSCRIPTION 1 1
5m5y TRANSCRIPTION 1 1
5uhg TRANSCRIPTION/DNA/RNA 1 1
3how TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID 1 1
4b1p TRANSFERASE/DNA 1 0
5iy9 TRANSCRIPTION, TRANSFERASE/DNA/RNA 1 1
5uha TRANSCRIPTION/DNA 1 1
3i4n TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3gtm TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
4a3j TRANSCRIPTION 1 1
5up6 TRANSCRIPTION/DNA/RNA 1 1
3m3y TRANSFERASE/DNA-RNA HYBRID 1 1
2yu9 TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
5ms0 TRANSCRIPTION/DNA/RNA 1 1
2nvz TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s2h TRANSCRIPTION/RNA/DNA 1 1
5sva TRANSCRIPTION, TRANSFERASE/DNA 1 1
5flm TRANSCRIPTION 1 1
2e2i TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3s1m TRANSCRIPTION/RNA/DNA 1 1
5uh9 TRANSCRIPTION/DNA/RNA 1 0
1y1w TRANSCRIPTION,TRANSFERASE/DNA-RNA HYBRID 1 1
3po3 TRANSFERASE/DNA/RNA 1 1
4a3i TRANSCRIPTION 1 1
5m64 TRANSCRIPTION 1 0
5ipm TRANSCRIPTION, TRANSFERASE/DNA/RNA 1 1
4by7 TRANSCRIPTION 1 1
3hoy TRANSCRIPTION,TRANSFERASE/DNA/RNA HYBRID 1 1
4bxx TRANSCRIPTION 1 1
5upc TRANSCRIPTION/DNA/RNA 1 1
5upa TRANSCRIPTION/DNA/RNA 1 1
4gzy TRANSCRIPTION/DNA/RNA 1 1
3gtp TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
4a3m TRANSCRIPTION 1 1
4v1o TRANSCRIPTION 1 0
5n61 TRANSFERASE 1 1
3gtj TRANSCRIPTION, TRANSFERASE/DNA-RNA HYBRI 1 1
4v1m TRANSCRIPTION 1 1
5vi8 TRANSCRIPTION 1 1
2r92 TRANSFERASE/RNA 1 1
4a3c TRANSCRIPTION 1 1
163 <-- Total --> 221 157
Blocks-3D output

Alignment of the family with reliable blocks

Reliable blocks are found by the program Blocks-3D with distance threshold 1.5 Å
Download
Blocks JSON: [PF04997.11.blocks.json]
Sequences JSON: [PF04997.11.dict.json]
Blocks TXT: [PF04997.11.fasta.hb]
Alignment FASTA: [PF04997.11.fasta.o]
Blocks-3D output HTML: [PF04997.11.fasta.hb.html]

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