Domains of Pfam family RNA_pol_Rpb1_5 (PF04998.16 )
Domain ID Uniprot AC Species Begin-End #Structures Interaction modes
A0QS66_804-939 A0QS66 Mycobacterium smegmatis 804-939 1
A0QS66_811-972 A0QS66 Mycobacterium smegmatis 811-972 1
A0QS66_831-996 A0QS66 Mycobacterium smegmatis 831-996 1
A0QS66_840-1005 A0QS66 Mycobacterium smegmatis 840-1005 3
A0QS66_1006-1110 A0QS66 Mycobacterium smegmatis 1006-1110 1
A0QS66_1035-1130 A0QS66 Mycobacterium smegmatis 1035-1130 1
A0QS66_1061-1173 A0QS66 Mycobacterium smegmatis 1061-1173 1
A0QS66_1068-1183 A0QS66 Mycobacterium smegmatis 1068-1183 2
A0QS66_1069-1177 A0QS66 Mycobacterium smegmatis 1069-1177 1
A7ZUK2_766-1317 A7ZUK2 Escherichia coli O139:H28 766-1317 3
B2SQQ2_767-1318 B2SQQ2 Xanthomonas oryzae pv. oryzae 767-1318 2  H-Bb *
C4R4Y0_808-1400 C4R4Y0 Komagataella phaffii 808-1400 16
G3MZY8_830-1427 G3MZY8 Bos taurus 830-1427 2  H-Bb *
I3LJR4_826-1416 I3LJR4 Sus scrofa 826-1416 3  H-Mn *
 L-Bb *
P04050_780-1336 P04050 Saccharomyces cerevisiae 780-1336 7  H-Bb L-Bb L-Mn *
 L-Bb *
 L-Bb L-Mn *
 L-Mn *
P04050_807-1397 P04050 Saccharomyces cerevisiae 807-1397 108  H-Bb *
 H-Bb L-Bb L-Mn *
 H-Bb L-Mn *
 L-Bb *
 L-Bb L-Mn *
 L-Mn *
P04051_855-1384 P04051 Saccharomyces cerevisiae 855-1384 11  H-Bb L-Mn *
 L-Bb *
P0A8T7_690-1205 P0A8T7 Escherichia coli 690-1205 1
P0A8T7_753-924 P0A8T7 Escherichia coli 753-924 1
P0A8T7_753-1287 P0A8T7 Escherichia coli 753-1287 6  H-Bb *
 L-Bb *
P0A8T7_754-1282 P0A8T7 Escherichia coli 754-1282 2  L-Bb *
P0A8T7_754-1303 P0A8T7 Escherichia coli 754-1303 2  L-Bb *
P0A8T7_763-1312 P0A8T7 Escherichia coli 763-1312 1
P0A8T7_766-1317 P0A8T7 Escherichia coli 766-1317 42  H-Bb *
 H-Bb L-Bb *
 L-Bb *
 S-Bb *
 S-Bb L-Bb *
P0A8T7_959-1106 P0A8T7 Escherichia coli 959-1106 1
P0A8T8_766-1317 P0A8T8 Escherichia coli O157:H7 766-1317 3  H-Bb *
P10964_904-1466 P10964 Saccharomyces cerevisiae 904-1466 1
P10964_906-1490 P10964 Saccharomyces cerevisiae 906-1490 1
P10964_910-1414 P10964 Saccharomyces cerevisiae 910-1414 5  L-Bb *
P10964_920-1424 P10964 Saccharomyces cerevisiae 920-1424 1
P10964_989-1611 P10964 Saccharomyces cerevisiae 989-1611 16  H-Bb *
 L-Bb *
P24928_830-1427 P24928 Homo sapiens 830-1427 9  H-Bb *
 L-Bb *
P9WGY7_842-1010 P9WGY7 Mycobacterium tuberculosis 842-1010 24  H-Bb 
P9WGY7_843-1218 P9WGY7 Mycobacterium tuberculosis 843-1218 1
P9WGY7_846-1017 P9WGY7 Mycobacterium tuberculosis 846-1017 5  H-Bb *
P9WGY7_1078-1189 P9WGY7 Mycobacterium tuberculosis 1078-1189 1
P9WGY7_1079-1195 P9WGY7 Mycobacterium tuberculosis 1079-1195 3
P9WGY7_1080-1201 P9WGY7 Mycobacterium tuberculosis 1080-1201 25
Q5JE34_50-332 Q5JE34 Thermococcus kodakarensis 50-332 1  L-Bb *
Q72HM6_1064-1304 Q72HM6 Thermus thermophilus 1064-1304 1  H-Bb *
Q72HM6_1282-1432 Q72HM6 Thermus thermophilus 1282-1432 1
Q8RQE8_1063-1237 Q8RQE8 Thermus thermophilus 1063-1237 13  H-Bb 
Q8RQE8_1063-1421 Q8RQE8 Thermus thermophilus 1063-1421 2  H-Bb 
Q8RQE8_1064-1271 Q8RQE8 Thermus thermophilus 1064-1271 3  H-Bb 
 H-Bb H-Mn *
 H-Bb L-Bb 
Q8RQE8_1064-1296 Q8RQE8 Thermus thermophilus 1064-1296 47  H-Bb 
 H-Bb L-Bb 
Q8RQE8_1266-1432 Q8RQE8 Thermus thermophilus 1266-1432 50  H-Bb 
Q8RQE8_1268-1414 Q8RQE8 Thermus thermophilus 1268-1414 13  H-Bb *
Q9KWU6_1064-1291 Q9KWU6 Thermus aquaticus 1064-1291 14
Q9KWU6_1269-1432 Q9KWU6 Thermus aquaticus 1269-1432 14
Interaction class:  H-Bb 

* interaction modes not found in water-containing structures resolved with X-RAY DIFFRACTION method having resolution better than 3 Angstrom

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