SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Ribbon-helix-helix
      Superfamily:
 Ribbon-helix-helix
        Family:
 CopG-like
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 Ribbon-helix-helix
      Superfamily:
 Ribbon-helix-helix
        Family:
 CopG-like
protein domain  species  PDB ID  instances  bonded 
Nickel responsive regulator NikR, N-terminal domain Escherichia coli [TaxId: 562] 2hzv 8 8
Transcriptional repressor CopG Streptococcus agalactiae [TaxId: 1311] 1b01 2 2
Transcriptional repressor CopG Streptococcus agalactiae [TaxId: 1311] 1ea4 21 21
Total: 3 31 31
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb S-Bb S-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: CopG-like [ a.43.1.3 ]
Analized complexes: 12
Complexes with DNA: 3
Conserved water: 73
Download:
Sequence alignment: a_43_1_3.fas ]
Sequence alignment with secondary structure: a_43_1_3_with_ss.fas ]
Superposition in PDB format: a.43.1.3.pdb ]
Alignment in MSF: a_43_1_3.msf ]
Image of alignment with secondary structure marked: a_43_1_3.PNG ]
Water clusters: a.43.1.3.flat.txt ]
a.43.1.3.pivot.txt ]
RasMol script: a.43.1.3.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
2cpg A - - 1
ON
2cpg B - - 2
ON
2cpg C - - 3
ON
1b01 A - - 4
ON
1b01 B - - 5
ON
1ea4 A - - 6
ON
1ea4 B - - 7
ON
1ea4 D - - 8
ON
1ea4 E - - 9
ON
1ea4 F - - 10
ON
1ea4 G - - 11
ON
1ea4 H - - 12
ON
1ea4 J - - 13
ON
1ea4 K - - 14
ON
1ea4 L - - 15
ON
1p94 A - - 16
ON
1p94 B - - 17
ON
2hza A 1 48 18
ON
2hza B 1 43 19
ON
1q5v A 1 48 20
ON
1q5v B 1 48 21
ON
1q5v C 1 48 22
ON
1q5v D 1 48 23
ON
2hzv A 1 48 24
ON
2hzv B 1 48 25
ON
2hzv C 1 48 26
ON
2hzv D 1 48 27
ON
2hzv E 1 48 28
ON
2hzv F 1 48 29
ON
2hzv G 1 48 30
ON
2hzv H 1 48 31
ON
2bj7 A 1 50 32
ON
2bj7 B 1 50 33
ON
2bj8 A 1 50 34
ON
2bj8 B 1 50 35
ON
2bj3 A 1 50 36
ON
2bj3 B 2 50 37
ON
2bj3 C 1 50 38
ON
2bj3 D 2 50 39
ON
2bj9 A 1 50 40
ON
2bj9 B 1 50 41
ON
2bj1 A 1 50 42
ON
2bj1 B 1 50 43
ON
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