SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Penicillinase repressor
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Penicillinase repressor
protein domain  species  PDB ID  instances  bonded 
Methicillin resistance regulatory protein MecI Staphylococcus aureus [TaxId: 1280] 1sax 2 2
Methicillin resistance regulatory protein MecI Staphylococcus aureus [TaxId: 1280] 2d45 4 4
Penicillinase repressor BlaI Staphylococcus aureus [TaxId: 1280] 1xsd 1 1
Penicillinase repressor BlaI Bacillus licheniformis [TaxId: 1402] 2p7c 1 1
Total: 4 8 8
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj S-Bb L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: Penicillinase repressor [ a.4.5.39 ]
Analized complexes: 9
Complexes with DNA: 4
Conserved water: 35
Download:
Sequence alignment: a_4_5_39.fas ]
Sequence alignment with secondary structure: a_4_5_39_with_ss.fas ]
Superposition in PDB format: a.4.5.39.pdb ]
Alignment in MSF: a_4_5_39.msf ]
Image of alignment with secondary structure marked: a_4_5_39.PNG ]
Water clusters: a.4.5.39.flat.txt ]
a.4.5.39.pivot.txt ]
RasMol script: a.4.5.39.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1okr A - - 1
ON
1okr B - - 2
ON
1sd6 A - - 3
ON
1sd6 B - - 4
ON
1sd7 A - - 5
ON
1sd7 B - - 6
ON
1sax A - - 7
ON
1sax B - - 8
ON
2d45 A 5 121 9
ON
2d45 B 5 121 10
ON
2d45 C 5 121 11
ON
2d45 D 7 121 12
ON
1p6r A - - 13
ON
2p7c B 1 82 14
ON
1sd4 A - - 15
ON
1sd4 B - - 16
ON
1xsd A 5 126 17
ON
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