SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 KorB DNA-binding domain-like
        Family:
 KorB DNA-binding domain-like
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 KorB DNA-binding domain-like
        Family:
 KorB DNA-binding domain-like
protein domain  species  PDB ID  instances  bonded 
Transcriptional repressor protein KorB DNA-binding domain Escherichia coli [TaxId: 562] 1r71 4 4
Total: 1 4 4
    Extended information about type of interaction with DNA:
General
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: KorB DNA-binding domain-like [ a.4.14.1 ]
Analized complexes: 2
Complexes with DNA: 1
Conserved water: 87
Download:
Sequence alignment: a_4_14_1.fas ]
Sequence alignment with secondary structure: a_4_14_1_with_ss.fas ]
Superposition in PDB format: a.4.14.1.pdb ]
Alignment in MSF: a_4_14_1.msf ]
Image of alignment with secondary structure marked: a_4_14_1.PNG ]
Water clusters: a.4.14.1.flat.txt ]
a.4.14.1.pivot.txt ]
RasMol script: a.4.14.1.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1r71 A - - 1
ON
1r71 B - - 2
ON
1r71 C - - 3
ON
1r71 D - - 4
ON
1vz0 A 116 208 5
ON
1vz0 B 116 208 6
ON
1vz0 C 116 208 7
ON
1vz0 D 116 208 8
ON
1vz0 E 116 208 9
ON
1vz0 F 116 208 10
ON
1vz0 G 116 208 11
ON
1vz0 H 116 208 12
ON
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