SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 Recombinase DNA-binding domain
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 Recombinase DNA-binding domain
protein domain  species  PDB ID  instances  bonded 
gamma,delta resolvase (C-terminal domain) Escherichia coli [TaxId: 562] 1gdt 2 2
gamma,delta resolvase (C-terminal domain) Escherichia coli [TaxId: 562] 1zr2 2 2
gamma,delta resolvase (C-terminal domain) Escherichia coli [TaxId: 562] 1zr4 4 4
gamma,delta resolvase (C-terminal domain) Escherichia coli [TaxId: 562] 2gm4 2 2
HIN recombinase (DNA-binding domain) Synthetic 1jkp 1 1
HIN recombinase (DNA-binding domain) Synthetic 1jkq 1 1
HIN recombinase (DNA-binding domain) Synthetic 1hcr 1 1
HIN recombinase (DNA-binding domain) Synthetic 1jkr 1 1
HIN recombinase (DNA-binding domain) Synthetic 1ijw 1 1
HIN recombinase (DNA-binding domain) Synthetic 1jj6 1 1
HIN recombinase (DNA-binding domain) Synthetic 1jj8 1 1
HIN recombinase (DNA-binding domain) Synthetic 1jko 1 1
Transposase tc3a1-65 Caenorhabditis elegans [TaxId: 6239] 1u78 2 2
Transposase tc3a1-65 Caenorhabditis elegans [TaxId: 6239] 1tc3 1 1
Total: 14 21 21
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Recombinase DNA-binding domain [ a.4.1.2 ]
Analized complexes: 20
Complexes with DNA: 14
Conserved water: 11
Download:
Sequence alignment: a_4_1_2.fas ]
Sequence alignment with secondary structure: a_4_1_2_with_ss.fas ]
Superposition in PDB format: a.4.1.2.pdb ]
Alignment in MSF: a_4_1_2.msf ]
Image of alignment with secondary structure marked: a_4_1_2.PNG ]
Water clusters: a.4.1.2.flat.txt ]
a.4.1.2.pivot.txt ]
RasMol script: a.4.1.2.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1hcr A - - 1
ON
1ijw C - - 2
ON
1jj6 C - - 3
ON
1jko C - - 4
ON
1jkr C - - 5
ON
1jj8 C - - 6
ON
1jkp C - - 7
ON
1jkq C - - 8
ON
1gdt A 141 183 9
ON
1gdt B 141 183 10
ON
1zr4 A 141 183 11
ON
1zr4 B 141 183 12
ON
1zr4 D 141 183 13
ON
1zr4 E 141 183 14
ON
2gm4 A 141 183 15
ON
2gm4 B 141 183 16
ON
1zr2 A 141 183 17
ON
1zr2 B 141 183 18
ON
1ret N/A - - 19
ON
1res N/A - - 20
ON
1tc3 C - - 21
ON
1u78 A 2 54 22
ON
1u78 A 55 104 23
ON
2ezl N/A - - 24
ON
2ezk N/A - - 25
ON
2ezi N/A - - 26
ON
2ezh N/A - - 27
ON
© NPIDB team 2003 - 2017

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