SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 Myb/SANT domain
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 Myb/SANT domain
protein domain  species  PDB ID  instances  bonded 
c-Myb, DNA-binding domain Mouse (Mus musculus) [TaxId: 10090] 1mse 2 2
c-Myb, DNA-binding domain Mouse (Mus musculus) [TaxId: 10090] 1msf 2 2
c-Myb, DNA-binding domain Mouse (Mus musculus) [TaxId: 10090] 1h88 3 2
c-Myb, DNA-binding domain Mouse (Mus musculus) [TaxId: 10090] 1h89 3 2
Telomere binding protein TBP1 Tobacco (Nicotiana tabacum) [TaxId: 4097] 2qhb 2 2
v-Myb Avian myeloblastosis virus [TaxId: 11866] 1h8a 2 2
Total: 6 14 12
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Myb/SANT domain [ a.4.1.3 ]
Analized complexes: 30
Complexes with DNA: 5
Conserved water: 70
Download:
Sequence alignment: a_4_1_3.fas ]
Sequence alignment with secondary structure: a_4_1_3_with_ss.fas ]
Superposition in PDB format: a.4.1.3.pdb ]
Alignment in MSF: a_4_1_3.msf ]
Image of alignment with secondary structure marked: a_4_1_3.PNG ]
Water clusters: a.4.1.3.flat.txt ]
a.4.1.3.pivot.txt ]
RasMol script: a.4.1.3.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1gvd A - - 1
ON
1gv5 A - - 2
ON
1guu A - - 3
ON
1gv2 A 89 143 4
ON
1gv2 A 144 190 5
ON
1h88 C 39 88 6
ON
1h88 C 89 143 7
ON
1h88 C 144 190 8
ON
1mbf N/A - - 9
ON
1mbh N/A - - 10
ON
1mbk N/A - - 11
ON
1idz N/A - - 12
ON
1mbj N/A - - 13
ON
1mbe N/A - - 14
ON
1mbg N/A - - 15
ON
1idy N/A - - 16
ON
1msf C 89 143 17
ON
1msf C 144 193 18
ON
1mse C 89 143 19
ON
1mse C 144 193 20
ON
1h89 C 77 88 21
ON
1h89 C 89 143 22
ON
1h89 C 144 191 23
ON
1a5j N/A 1 55 24
ON
1a5j N/A 56 110 25
ON
1h8a C 87 143 26
ON
1h8a C 144 191 27
ON
1fex A - - 28
ON
1ofc X 799 850 29
ON
1ug2 A - - 30
ON
1wgx A - - 31
ON
2crg A 8 64 32
ON
2iw5 B 376 440 33
ON
2uxn B 376 440 34
ON
2cjj A 8 70 35
ON
2cqq A 8 66 36
ON
2cqr A 7 66 37
ON
1xc5 A 413 480 38
ON
2cu7 A 8 72 39
ON
© NPIDB team 2003 - 2017

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