SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 Paired domain
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 Paired domain
protein domain  species  PDB ID  instances  bonded 
Paired protein (prd) Fruit fly (Drosophila melanogaster) [TaxId: 7227] 1pdn 1 1
Pax-5 Human (Homo sapiens) [TaxId: 9606] 1k78 5 5
Pax-5 Human (Homo sapiens) [TaxId: 9606] 1mdm 2 2
Pax-6 Human (Homo sapiens) [TaxId: 9606] 6pax 2 2
Total: 4 10 10
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb L-Mn 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Paired domain [ a.4.1.5 ]
Analized complexes: 4
Complexes with DNA: 4
Conserved water: 47
Download:
Sequence alignment: a_4_1_5.fas ]
Sequence alignment with secondary structure: a_4_1_5_with_ss.fas ]
Superposition in PDB format: a.4.1.5.pdb ]
Alignment in MSF: a_4_1_5.msf ]
Image of alignment with secondary structure marked: a_4_1_5.PNG ]
Water clusters: a.4.1.5.flat.txt ]
a.4.1.5.pivot.txt ]
RasMol script: a.4.1.5.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1k78 A 19 81 1
ON
1k78 A 82 142 2
ON
1k78 E 19 81 3
ON
1k78 E 82 142 4
ON
1k78 I 84 141 5
ON
1mdm A 19 81 6
ON
1mdm A 82 142 7
ON
6pax A 1 68 8
ON
6pax A 69 133 9
ON
1pdn C - - 10
ON
© NPIDB team 2003 - 2017

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