SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 DNA-binding domain of rap1
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 Homeodomain-like
        Family:
 DNA-binding domain of rap1
protein domain  species  PDB ID  instances  bonded 
DNA-binding domain of rap1 Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] 1ign 4 4
Total: 1 4 4
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb L-Mj 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: DNA-binding domain of rap1 [ a.4.1.6 ]
Analized complexes: 1
Complexes with DNA: 1
Conserved water: 42
Download:
Sequence alignment: a_4_1_6.fas ]
Sequence alignment with secondary structure: a_4_1_6_with_ss.fas ]
Superposition in PDB format: a.4.1.6.pdb ]
Alignment in MSF: a_4_1_6.msf ]
Image of alignment with secondary structure marked: a_4_1_6.PNG ]
Water clusters: a.4.1.6.flat.txt ]
a.4.1.6.pivot.txt ]
RasMol script: a.4.1.6.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1ign A 360 445 1
ON
1ign A 446 594 2
ON
1ign B 360 445 3
ON
1ign B 446 594 4
ON
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