SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 CAP C-terminal domain-like
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 CAP C-terminal domain-like
protein domain  species  PDB ID  instances  bonded 
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1o3s 1 1
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1cgp 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1o3t 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 2cgp 1 1
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1zrc 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1run 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1zrd 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1ruo 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1j59 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1zre 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1lb2 1 1
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1zrf 2 2
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1o3q 1 1
Catabolite gene activator protein (CAP), C-terminal domain Escherichia coli [TaxId: 562] 1o3r 1 1
Chlorophenol reduction protein CprK Desulfitobacterium hafniense [TaxId: 49338] 3e6c 1 1
Total: 15 24 24
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: CAP C-terminal domain-like [ a.4.5.4 ]
Analized complexes: 26
Complexes with DNA: 14
Conserved water: 111
Download:
Sequence alignment: a_4_5_4.fas ]
Sequence alignment with secondary structure: a_4_5_4_with_ss.fas ]
Superposition in PDB format: a.4.5.4.pdb ]
Alignment in MSF: a_4_5_4.msf ]
Image of alignment with secondary structure marked: a_4_5_4.png ]
Water clusters: a.4.5.4.flat.txt ]
a.4.5.4.pivot.txt ]
RasMol script: a.4.5.4.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1i5z A 138 206 1
ON
1i5z B 138 207 2
ON
1hw5 A 138 208 3
ON
1hw5 B 138 205 4
ON
1zrf A 138 207 5
ON
1zrf B 138 207 6
ON
1g6n A 138 206 7
ON
1g6n B 438 507 8
ON
1i6x A 138 206 9
ON
1i6x B 138 207 10
ON
2gzw A 138 206 11
ON
2gzw B 138 203 12
ON
2gzw C 138 206 13
ON
2gzw D 138 207 14
ON
2cgp A 138 207 15
ON
1j59 A 138 207 16
ON
1j59 B 138 205 17
ON
1run A 138 209 18
ON
1run B 138 205 19
ON
1zrd A 138 207 20
ON
1zrd B 138 207 21
ON
1zre A 138 207 22
ON
1zre B 138 207 23
ON
1ruo A 138 206 24
ON
1ruo B 138 209 25
ON
1zrc A 138 207 26
ON
1zrc B 138 207 27
ON
1lb2 A 138 209 28
ON
1o3r A 138 207 29
ON
1cgp A 138 205 30
ON
1cgp B 138 205 31
ON
1o3q A 138 207 32
ON
1o3s A 138 207 33
ON
1o3t A 138 207 34
ON
1o3t B 138 205 35
ON
1ft9 A 134 213 36
ON
1ft9 B 134 213 37
ON
2bgc A 138 237 38
ON
2bgc B 138 237 39
ON
2bgc D 138 237 40
ON
2bgc E 138 237 41
ON
2bgc F 138 237 42
ON
2bgc G 138 237 43
ON
2bgc H 138 235 44
ON
2bgc I 138 237 45
ON
2beo A 138 237 46
ON
2beo B 138 237 47
ON
1omi A 1138 1237 48
ON
1omi B 2138 2237 49
ON
2gau A 152 232 50
ON
1zyb A 148 220 51
ON
2coh A 118 199 52
ON
© NPIDB team 2003 - 2017

text