SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Replication terminator protein (RTP)
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Replication terminator protein (RTP)
protein domain  species  PDB ID  instances  bonded 
Replication terminator protein (RTP) Bacillus subtilis [TaxId: 1423] 2efw 4 4
Replication terminator protein (RTP) Bacillus subtilis [TaxId: 1423] 1f4k 2 2
Replication terminator protein (RTP) Bacillus subtilis [TaxId: 1423] 2dpd 2 2
Replication terminator protein (RTP) Bacillus subtilis [TaxId: 1423] 2dpu 1 1
Total: 4 9 9
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj S-Bb S-Mn L-Bb L-Mj 
Method of 3-D alignment: SSM
Quality of 3-D alignment: high
Analized family: Replication terminator protein (RTP) [ a.4.5.7 ]
Analized complexes: 5
Complexes with DNA: 3
Conserved water: 15
Download:
Sequence alignment: a_4_5_7.fas ]
Sequence alignment with secondary structure: a_4_5_7_with_ss.fas ]
Superposition in PDB format: a.4.5.7.pdb ]
Alignment in MSF: a_4_5_7.msf ]
Image of alignment with secondary structure marked: a_4_5_7.PNG ]
Water clusters: a.4.5.7.flat.txt ]
a.4.5.7.pivot.txt ]
RasMol script: a.4.5.7.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1bm9 A - - 1
ON
1bm9 B - - 2
ON
1f4k A - - 3
ON
1f4k B - - 4
ON
1j0r A - - 5
ON
1j0r B - - 6
ON
2dpu A 8 122 7
ON
2dpd A 8 122 8
ON
2dpd B 8 122 9
ON
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