SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Replication initiation protein
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Replication initiation protein
protein domain  species  PDB ID  instances  bonded 
RepE54 Escherichia coli, mini-F plasmid [TaxId: 562] 1rep 2 2
RepE54 Escherichia coli, mini-F plasmid [TaxId: 562] 2z9o 4 2
Replication initiation protein PI Escherichia coli [TaxId: 562] 2nra 2 2
Total: 3 8 6
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: low
Analized family: Replication initiation protein [ a.4.5.10 ]
Analized complexes: 2
Complexes with DNA: 1
Conserved water: 3
Download:
Sequence alignment: a_4_5_10.fas ]
Sequence alignment with secondary structure: a_4_5_10_with_ss.fas ]
Superposition in PDB format: a.4.5.10.pdb ]
Alignment in MSF: a_4_5_10.msf ]
Image of alignment with secondary structure marked: a_4_5_10.PNG ]
Water clusters: a.4.5.10.flat.txt ]
a.4.5.10.pivot.txt ]
RasMol script: a.4.5.10.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1rep C 15 143 1
ON
1rep C 144 246 2
ON
1hkq A - - 3
ON
1hkq B - - 4
ON
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