SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 P4 origin-binding domain-like
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 P4 origin-binding domain-like
protein domain  species  PDB ID  instances  bonded 
Class II MHC transcription factor RFX1 Human (Homo sapiens) [TaxId: 9606] 1dp7 1 1
Total: 1 1 1
    Extended information about type of interaction with DNA:
General
Interaction class:  S-Bb S-Mj L-Bb L-Mj 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: P4 origin-binding domain-like [ a.4.5.20 ]
Analized complexes: 2
Complexes with DNA: 1
Conserved water: 1
Download:
Sequence alignment: a_4_5_20.fas ]
Sequence alignment with secondary structure: a_4_5_20_with_ss.fas ]
Superposition in PDB format: a.4.5.20.pdb ]
Alignment in MSF: a_4_5_20.msf ]
Image of alignment with secondary structure marked: a_4_5_20.PNG ]
Water clusters: a.4.5.20.flat.txt ]
a.4.5.20.pivot.txt ]
RasMol script: a.4.5.20.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1dp7 P - - 1
ON
1ka8 A - - 2
ON
1ka8 B - - 3
ON
1ka8 C - - 4
ON
1ka8 D - - 5
ON
1ka8 E - - 6
ON
1ka8 F - - 7
ON
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