SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 ets domain
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 ets domain
protein domain  species  PDB ID  instances  bonded 
Elk-1 Human (Homo sapiens) [TaxId: 9606] 1dux 2 2
ETS-1 transcription factor, residues 331-440 Human (Homo sapiens) [TaxId: 9606] 2stt 1 1
ETS-1 transcription factor, residues 331-440 Human (Homo sapiens) [TaxId: 9606] 2stw 1 1
ETS-1 transcription factor, residues 331-440 Mouse (Mus musculus) [TaxId: 10090] 1k78 2 2
ETS-1 transcription factor, residues 331-440 Mouse (Mus musculus) [TaxId: 10090] 1k79 2 2
ETS-1 transcription factor, residues 331-440 Mouse (Mus musculus) [TaxId: 10090] 1k7a 2 2
ETS-1 transcription factor, residues 331-440 Mouse (Mus musculus) [TaxId: 10090] 1mdm 1 1
GA binding protein (GABP) alpha Mouse (Mus musculus) [TaxId: 10090] 1awc 1 1
Sam pointed domain containing ets transcription SPDEF Human (Homo sapiens) [TaxId: 9606] 1yo5 1 1
Serum response factor accessory protein 1a, SAP-1 Human (Homo sapiens) [TaxId: 9606] 1k6o 1 1
Serum response factor accessory protein 1a, SAP-1 Human (Homo sapiens) [TaxId: 9606] 1bc8 1 1
Serum response factor accessory protein 1a, SAP-1 Human (Homo sapiens) [TaxId: 9606] 1bc7 1 1
Serum response factor accessory protein 1a, SAP-1 Human (Homo sapiens) [TaxId: 9606] 1hbx 2 2
Transcription factor PU.1, residues 171-259 Mouse (Mus musculus) [TaxId: 10090] 1pue 2 2
Total: 14 20 20
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: ets domain [ a.4.5.21 ]
Analized complexes: 19
Complexes with DNA: 14
Conserved water: 179
Download:
Sequence alignment: a_4_5_21.fas ]
Sequence alignment with secondary structure: a_4_5_21_with_ss.fas ]
Superposition in PDB format: a.4.5.21.pdb ]
Alignment in MSF: a_4_5_21.msf ]
Image of alignment with secondary structure marked: a_4_5_21.PNG ]
Water clusters: a.4.5.21.flat.txt ]
a.4.5.21.pivot.txt ]
RasMol script: a.4.5.21.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1fli A - - 1
ON
1md0 A - - 2
ON
1md0 B - - 3
ON
1k78 B - - 4
ON
1k78 F - - 5
ON
1k79 A - - 6
ON
1k79 D - - 7
ON
1k7a A - - 8
ON
1k7a D - - 9
ON
1mdm B - - 10
ON
1r36 A - - 11
ON
1gvj A - - 12
ON
1gvj B - - 13
ON
2stt A - - 14
ON
2stw A - - 15
ON
1pue E - - 16
ON
1pue F - - 17
ON
1awc A - - 18
ON
1bc8 C - - 19
ON
1bc7 C - - 20
ON
1k6o A - - 21
ON
1hbx G - - 22
ON
1hbx H - - 23
ON
1dux C - - 24
ON
1dux F - - 25
ON
1yo5 C 247 334 26
ON
1wwx A 8 101 27
ON
© NPIDB team 2003 - 2017

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