SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Interferon regulatory factor
SCOP:
 All list
  Class:
 All alpha proteins
    Fold:
 DNA/RNA-binding 3-helical bundle
      Superfamily:
 "Winged helix" DNA-binding domain
        Family:
 Interferon regulatory factor
protein domain  species  PDB ID  instances  bonded 
Interferon regulatory factor 1 (IRF-1) Mouse (Mus musculus) [TaxId: 10090] 1if1 2 2
Interferon regulatory factor 3, IRF-3 Human (Homo sapiens) [TaxId: 9606] 1t2k 2 2
Interferon regulatory factor 3, IRF-3 Human (Homo sapiens) [TaxId: 9606] 2o6g 4 4
Interferon regulatory factor 3, IRF-3 Human (Homo sapiens) [TaxId: 9606] 2pi0 4 4
Interferon regulatory factor-2, IRF-2 Mouse (Mus musculus) [TaxId: 10090] 2irf 6 6
Total: 5 18 18
    Extended information about type of interaction with DNA:
General
Interaction class:  H-Bb H-Mj L-Bb 
Method of 3-D alignment: SSM
Quality of 3-D alignment: middle
Analized family: Interferon regulatory factor [ a.4.5.23 ]
Analized complexes: 5
Complexes with DNA: 3
Conserved water: 64
Download:
Sequence alignment: a_4_5_23.fas ]
Sequence alignment with secondary structure: a_4_5_23_with_ss.fas ]
Superposition in PDB format: a.4.5.23.pdb ]
Alignment in MSF: a_4_5_23.msf ]
Image of alignment with secondary structure marked: a_4_5_23.PNG ]
Water clusters: a.4.5.23.flat.txt ]
a.4.5.23.pivot.txt ]
RasMol script: a.4.5.23.spt ]
Jmol visualisation of conserved water
PDB ID Chain Start residue End residue Model number Show
1if1 A - - 1
ON
1if1 B - - 2
ON
2irf G - - 3
ON
2irf H - - 4
ON
2irf I - - 5
ON
2irf J - - 6
ON
2irf K - - 7
ON
2irf L - - 8
ON
1irg N/A - - 9
ON
1irf N/A - - 10
ON
1t2k A - - 11
ON
1t2k B - - 12
ON
© NPIDB team 2003 - 2017

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